Homo sapiens (human): 79728
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Entry
79728 CDS
T01001
Symbol
PALB2, BROVCA5, FANCN, PNCA3
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
hsa
Homo sapiens (human)
Pathway
hsa03440
Homologous recombination
hsa03460
Fanconi anemia pathway
Network
nt06506
Double-strand break repair
nt06508
Interstrand crosslink repair
Element
N01452
Homologous recombination
N01466
Homologous recombination in ICLR
Disease
H00019
Pancreatic cancer
H00031
Breast cancer
H00238
Fanconi anemia
H02531
Familial breast-ovarian cancer
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
79728 (PALB2)
03460 Fanconi anemia pathway
79728 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsa03400
]
79728 (PALB2)
DNA repair and recombination proteins [BR:
hsa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
79728 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
79728 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
79728
NCBI-ProteinID:
NP_078951
OMIM:
610355
HGNC:
26144
Ensembl:
ENSG00000083093
UniProt:
Q86YC2
Structure
PDB
PDBj
LinkDB
All DBs
Position
16:complement(23603165..23641310)
Genome browser
AA seq
1186 aa
AA seq
DB search
MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR
TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST
DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD
TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ
RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN
RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL
KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS
PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT
TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG
SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcctcccgggaagcccctcagctgtgaggagaaggaaaagttaaaggagaaa
ttagcattcttgaaaagggaatacagcaagacactagcccgccttcagcgtgcccaaaga
gctgaaaagattaagcattctattaagaaaacagtagaagaacaagattgtttgtctcag
caggatctctcaccgcagctaaaacactcagaacctaaaaataaaatatgtgtttatgac
aagttacacatcaaaacccatcttgatgaagaaactggagaaaagacatctatcacactt
gatgttgggcctgagtcctttaaccctggagatggcccaggaggattacctatacaaaga
acagatgacacccaagaacattttccccacagggtcagtgaccctagtggtgagcaaaag
cagaagctgccaagcagaagaaagaagcagcagaagaggacatttatttcacaggagaga
gactgtgtctttggcactgattcactcagattgtctgggaaaagactaaaggaacaggaa
gaaatcagtagcaaaaatcctgctagatcaccagtaactgaaataagaactcacctttta
agtcttaaatctgaacttccagattctccagaaccagttacagaaattaatgaagacagt
gtattaattccaccaactgcccaaccagaaaaaggtgttgatacattcctaagaagacct
aatttcaccagggcgactacagttcctttacagactctatcagatagcggtagtagtcag
caccttgaacacattcctcctaaaggtagcagtgaacttactactcacgacctaaaaaac
attagatttacttcacctgtaagtttggaggcacaaggcaaaaaaatgactgtctctaca
gataacctccttgtaaataaagctataagtaaaagtggccaactgcccacaagttctaat
ttagaggcaaatatttcatgttctctaaatgaactcacctacaataacttaccagcaaat
gaaaaccaaaacttaaaagaacaaaatcaaacagagaaatctttaaaatctcccagtgac
actcttgatggcaggaatgaaaatcttcaggaaagtgagattctaagtcaacctaagagt
cttagcctggaagcaacctctcctctttctgcagaaaaacattcttgcacagtgcctgaa
ggccttctgtttcctgcagaatattatgttagaacaacacgaagcatgtccaattgccag
aggaaagtagccgtggaggctgtcattcagagtcatttggatgtcaagaaaaaagggttt
aaaaataaaaataaggatgcaagtaaaaatttaaacctttccaatgaggaaactgaccaa
agtgaaattaggatgtctggcacatgcacaggacaaccaagttcaagaacctctcagaaa
cttctctcattaactaaagtcagctctcccgctgggcccactgaagataatgacttgtct
aggaaggcagttgcccaagcacctggtagaagatacacaggaaaaagaaaatcagcctgc
accccagcatcagatcattgtgaaccacttttgccaacttctagcctgtcgattgttaac
aggtccaaggaagaagtcacctcacacaaatatcagcacgaaaaattatttattcaagtg
aaagggaagaaaagtcgtcatcaaaaagaggattccctttcttggagtaatagtgcttat
ttatccttggatgatgatgctttcacggctccatttcatagggatggaatgctgagttta
aagcaactactgtcttttctcagtatcacagactttcagttacctgatgaagactttgga
cctcttaagcttgaaaaagtgaagtcctgctcagaaaaaccagtggagccctttgagtca
aaaatgtttggagagagacatcttaaagagggaagctgtatttttccagaggaactgagt
cctaaacgcatggatacagaaatggaggacttagaagaggaccttattgttctaccagga
aaatcacatcccaaaaggccaaactcgcaaagccagcatacaaagacgggcctttcttca
tccatattactttatactcctttaaatacggttgcgcctgatgataatgacaggcctacc
acagacatgtgttcacctgctttccccatcttaggtactactccagcctttggccctcaa
ggctcctatgaaaaagcatctacagaagttgctggacgaacttgctgcacaccccaactt
gctcatttgaaagactcagtctgtcttgccagtgatactaaacaattcgacagttcaggc
agcccagcaaaaccacataccaccctgcaagtgtcaggcaggcaaggacaacctacctgt
gactgtgactctgtcccgccaggaacacctccacccattgagtcattcacttttaaagaa
aatcagctctgtagaaacacatgccaggagctgcataaacattccgtcgaacagactgaa
acagcagagcttcctgcttctgatagcataaacccaggcaacctacaattggtttcagag
ttaaagaatccttcaggttcctgttccgtagatgtgagtgccatgttttgggaaagagcc
ggttgtaaagagccatgtatcataactgcttgcgaagatgtagtttctctttggaaagct
ctggatgcttggcagtgggaaaaactttatacctggcacttcgcagaggttccagtatta
cagatagttccagtgcctgatgtgtataatctcgtgtgtgtagctttgggaaatttggaa
atcagagagatcagggcattgttttgttcctctgatgatgaaagtgaaaagcaagtacta
ctgaagtctggaaatataaaagctgtgcttggcctgacaaagaggaggctagttagtagc
agtgggaccctttctgatcaacaagtagaagtcatgacgtttgcagaagatggaggaggc
aaagaaaaccaatttttgatgccccctgaggagactatactaacttttgctgaggtccaa
gggatgcaagaagctctgcttggtactactattatgaacaacattgttatttggaattta
aaaactggtcaactcctgaaaaagatgcacattgatgattcttaccaagcttcagtctgt
cacaaagcctattctgaaatggggcttctctttattgtcctgagtcatccctgtgccaaa
gagagtgagtcgttgcgaagccctgtgtttcagctcattgtgattaaccctaagacgact
ctcagcgtgggtgtgatgctgtactgtcttcctccagggcaggctggcaggttcctggaa
ggtgacgtgaaagatcactgtgcagcagcaatcttgacttctggaacaattgccatttgg
gacttacttctcggtcagtgtactgccctcctcccacctgtctctgaccaacattggtct
tttgtgaaatggtcgggtacagactctcatttgctggctggacaaaaagatggaaatata
tttgtataccactattcataa
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