EP0891334A1 - Inhibitors of farnesyl-protein transferase - Google Patents

Inhibitors of farnesyl-protein transferase

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Publication number
EP0891334A1
EP0891334A1 EP97918643A EP97918643A EP0891334A1 EP 0891334 A1 EP0891334 A1 EP 0891334A1 EP 97918643 A EP97918643 A EP 97918643A EP 97918643 A EP97918643 A EP 97918643A EP 0891334 A1 EP0891334 A1 EP 0891334A1
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Prior art keywords
compound
accordance
hydrogen
alkyl
aryl
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Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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EP97918643A
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German (de)
French (fr)
Inventor
Christopher Dinsmore
Neville Anthony
Gerald E. Stokker
Robert Gomez
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Merck and Co Inc
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Merck and Co Inc
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Priority claimed from GBGB9613462.2A external-priority patent/GB9613462D0/en
Application filed by Merck and Co Inc filed Critical Merck and Co Inc
Publication of EP0891334A1 publication Critical patent/EP0891334A1/en
Withdrawn legal-status Critical Current

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    • C07D233/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings
    • C07D233/54Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members
    • C07D233/56Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members with only hydrogen atoms or radicals containing only hydrogen and carbon atoms, attached to ring carbon atoms
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    • A61P13/00Drugs for disorders of the urinary system
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    • A61P27/00Drugs for disorders of the senses
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    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D233/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings
    • C07D233/54Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members
    • C07D233/64Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members with substituted hydrocarbon radicals attached to ring carbon atoms, e.g. histidine
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    • C07D233/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings
    • C07D233/54Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members
    • C07D233/66Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
    • C07D233/70One oxygen atom
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    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
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    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/10Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings linked by a carbon chain containing aromatic rings
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    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
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    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/06Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Definitions

  • the present invention relates to compounds which inhibit farnesyl protein transferase, a protein which is implicated in the oncogenic pathway mediated by Ras.
  • the Ras proteins (Ha-Ras, Ki4a- Ras, Ki4b-Ras and N-Ras) are part of a signalling pathway that links cell surface growth factor receptors to nuclear signals initiating cellular proliferation.
  • Biological and biochemical studies of Ras action indicate that Ras functions like a G-regulatory protein. In the inactive state, Ras is bound to GDP. Upon growth factor receptor activation Ras is induced to exchange GDP for GTP and undergoes a conformational change.
  • Ras The GTP-bound form of Ras propagates the growth stimulatory signal until the signal is terminated by the intrinsic GTPase activity of Ras, which returns the protein to its inactive GDP bound form (D.R. Lowy and D.M. Willumsen, Ann. Rev. Biochem. 62:851 -891 ( 1993)).
  • Mutated ras genes ( a-ras, Ki4a- ⁇ w, Ki4b-ra.s and N-ras) are found in many human cancers, including colorectal carcinoma, exocrine pancreatic carcinoma, and myeloid leukemias. The protein products of these genes are defective in their GTPase activity and constitutively transmit a growth stimulatory signal.
  • Ras must be localized to the plasma membrane for both normal and oncogenic functions. At least 3 post-translational modifications are involved with Ras membrane localization, and all 3 modifications occur at the C-terminus of Ras.
  • the Ras C-terminus contains a sequence motif termed a "CAAX” or "Cys-Aaa ⁇ -Aaa ⁇ -Xaa” box (Cys is cysteine, Aaa is an aliphatic amino acid, the Xaa is any amino acid) (Willumsen et al, Nature 370:583-586 ( 1984)).
  • this motif serves as a signal sequence for the enzymes famesyl-protein transferase or geranylgeranyl-protein transferase, which catalyze the alkylation of the cysteine residue of the CAAX motif with a C15 or C20 isoprenoid, respectively.
  • Ras proteins are known to undergo post-translational famesylation.
  • farnesylated proteins include the Ras-related GTP-binding proteins such as Rho, fungal mating factors, the nuclear lamins, and the gamma subunit of transducin. James, et al., J. Biol. Chem. 269, 14182 (1994) have identified a peroxisome associated protein Pxf which is also farnesylated. James, et al., have also suggested that there are farnesylated proteins of unknown structure and function in addition to those listed above.
  • FPTase famesyl-protein transferase
  • FPP fa esyl diphosphate
  • Ras protein substrates
  • the peptide derived inhibitors that have been described are generally cysteine containing molecules that are related to the CAAX motif that is the signal for protein prenylation.
  • Such inhibitors may inhibit protein prenylation while serving as altemate substrates for the famesyl-protein transferase enzyme, or may be purely competitive inhibitors (U.S. Patent 5,141 ,851 , University of Texas; N.E. Kohl et al, Science, 260: 1934-1931 (1993); Graham, et al., J. Med. Chem., 37, 725 ( 1994)). It has recently been reported that FPT-ase inhibitors also inhibit the proliferation of vascular smooth muscle cells and are therefore useful in the prevention and treatment of arteriosclerosis and diabetic disturbance of blood vessels (JP H7-1 12930).
  • R 1 a, R 1 b an£ j R2 are independently selected from the group consisting of: hydrogen, aryl, substituted aryl, heterocyclyl, C3-C 10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, R 0-, R 9 S(0) m - wherein m is 0, 1 or 2, R C(0)NR 8 -, CN, N ⁇ 2, (R 8 )2NC(NR 8 )-, R 8 C(0)-, R 8 OC(0)-, N3, -N(R 8 )2, R 9 OC(0)NR 8 - and C1 -C6 alkyl, unsubstituted or substituted by 1 -3 groups selected from the group consisting of: halo, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C
  • R3 and R ⁇ are independently selected from the group consisting of: H, F, Cl, Br, -NR 8 2, CF3, N ⁇ 2, R 8 0-, R 9 S(0) m -, CF 3 (CH 2 ) n -0-, R 8 C(0)NH-, H2NC(NH)-, R C(0)-, R 8 OC(0)-, N3, CN, R 9 OC(0)NR 8 -, Cl -C20 alkyl, substituted or unsubstituted aryl and substituted or unsubstituted heterocyclyl;
  • a 3 is selected from: -C ⁇ C — , — R C CR ⁇ " , -C(O)- , aryl, heteroaryl or a bond; provided that when A ⁇ is heteroaryl, attachment of A ⁇ the remainder of the molecule is through substitutable heteroaryl ring carbons;
  • X represents aryl or heteroaryl; provided that when X is heteroaryl, attachment of X the remainder of the molecule is through substitutable heteroaryl ring carbons;
  • is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, Ci-6 perfluoroalkyl, F, Cl, Br, R 0-, R 9 S(0) m -, R 8 C(0)NR 8 -, CN, N ⁇ 2, (R 8 )2NC(NR 8 )-, R C(0)-, R 8 OC(0)-, 1 3, -N(R 8 )2, R 9 OC(0)NR 8 - and C1 -C6 alkyl unsubstituted or substituted by 1-3 groups selected from: aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R 0-, R 9 S(0)m-, R 8 C(0)NR*-, CN, (R )2NC(NR
  • R 7 is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, C ⁇ . 6 perfluoroalkyl, F, Cl, Br, R 9 0-, R 9 S(0) m -, R C(0)NR 8 , CN, N ⁇ 2, (R )2NC(NR 8 )-, R 8 C(0)-, R 8 OC(0)-, N3, -N(R )2, R 9 OC(0)NR 8 - and C1 -C6 alkyl unsubstituted or substituted by 1 -3 groups selected from: aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R 8 0-, R 9 S(0)m-, R 8 C(0)NR*-, CN, (R >2
  • each R 8 is independently selected from hydrogen, Cl -C6 alkyl, aryl and aralkyl;
  • each R 9 is independently selected from C1-C alkyl and aryl
  • V is selected from the group consisting of: hydrogen, heterocyclyl, aryl, C1 -C2O alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if A ⁇ is S(0) m and V is not hydrogen if A 1 is a bond, n is 0 and A 2 is S(0) m ; provided that when V is heterocyclyl, attachment of V to R6 and to A l is through a substitutable ring carbon;
  • W represents heterocyclyl; each n and p independently represents 0, 1 , 2, 3 or 4; r is 0 to 5, provided that r is 0 when V is hydrogen, and t is 1.
  • the compounds of this invention are useful in the inhibition of famesyl-protein transferase and the famesylation of the oncogene protein Ras, and thus are useful for the treatment of cancer.
  • the compounds of the present invention may have asymmetric centers and occur as racemates, racemic mixtures and as individual diastereomers, with all possible isomers, including optical isomers, being included in the present invention.
  • alkyl and the alkyl portion of alkoxy, aralkyl and similar terms, is intended to include branched and straight-chain saturated aliphatic hydrocarbon groups having the specified number of carbon atoms, or 1 -6 carbon atoms if unspecified. Cycloalkyl means 1 -2 carbocyclic rings which are saturated and contain from 3- 10 atoms.
  • Halogen or "halo” as used herein means fluoro, chloro, bromo and iodo.
  • aryl and the aryl portion of aralkyl, are intended to mean any stable monocyclic or bicyclic carbon ring of up to 7 members in each ring, wherein at least one ring is aromatic.
  • aryl elements include phenyl, naphthyl, tetrahydronaphthyl, indanyl, biphenyl, phenanthryl, anthryl or acenaphthyl.
  • a preferred aralkyl group is benzyl.
  • heterocyclyl, heterocycle and heterocyclic mean a 5- to 7-membered monocyclic or 8- to 1 1 - membered bicyclic heterocyclic rings, either saturated or unsaturated, aromatic, partially aromatic or non-aromatic, and which consist of carbon atoms and from one to four heteroatoms selected from the group consisting of N, O, and S.
  • it includes any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring.
  • the ring or ring system may be attached at any heteroatom or carbon atom which results in a stable structure. It optionally contains 1 -3 carbonyl groups.
  • heterocycles include, but are not limited to, azepinyl, benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothiopyranyl sulfone, furyl, imidazolidinyl, imidazolinyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolidinyl, isothiazolyl, isothiazolidinyl, morpholinyl, naphthyridinyl, oxadiazolyl, 2-
  • Heteroaryl is a subset of heterocyclic as defined above, and means a monocyclic or bicyclic ring system, with up to 7 members in each ring, wherein at least one ring is aromatic and wherein from one to four carbon atoms are replaced by heteroatoms selected from the group consisting of N, O and S.
  • Examples include benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothiopyranyl sulfone, furyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolyl, naphthyridinyl, oxadiazolyl, pyridyl, pyrazinyl, pyrazolyl, pyridazinyl, pyrimidinyl, pyrrolyl, quinazolinyl, quinolinyl, quinoxal
  • Substituted alkyl, substituted aryl, substituted heterocyclyl and substituted cycloalkyl mean alkyl, aryl, heterocyclyl and cycloalkyl groups, respectively, having from 1 -3 substituents which are selected from: halo, aryl, heterocyclyl, C3-10 cycloalkyl, C2-6 alkenyl, C2-6 alkynyl, R 0-, R 9 S(0) m -, R»C(0)NR «-, CN, (R «) 2 NC(NR «)-, R «C(0)-, R «OC(0)-, N3, -N(R 8 )2 and R ⁇ OC(0)NR x -.
  • a substituted alkyl group is substituted with a "substituted aryl group”
  • the aryl portion is substituted with 1 -3 groups as defined above.
  • Rla ? Rlb anc j R2 are independently selected from: hydrogen, -N(R 8 )2, R 8 C(0)NR 8 - or unsubstituted or substituted C1 -C6 alkyl wherein the substituent on the substituted C1 -C6 alkyl is selected from unsubstituted or substituted aryl, -N(R )2, R 8 0- and R C(0)NR 8 -.
  • R3 and R 4 are selected from: hydrogen, C 1 -C6 alkyl, Br, Cl, F, R «0-, and CF3.
  • a particularly preferred group of compounds within this subset includes compounds of formula I wherein A 3 represents -C ⁇ C or a bond.
  • Another preferred group of compounds includes the compounds of formula I wherein A 3 represents aryl or heteroaryl.
  • R 6 represents CN.
  • R ⁇ represents hydrogen, unsubstituted or substituted C l -C6 alkyl.
  • R x represents H or Cj- 6 alkyl
  • R 9 is Ci -6 alkyl
  • a ⁇ and A 2 are independently selected from: a bond, -C(0)NR 8 -, -NR 8 C(0)-, -O-, -N(R 8 )-, -S(0)2N(R 8 )- and- N(R )S(0)2-.
  • V is selected from hydrogen, heterocyclyl and aryl. More preferably V is phenyl.
  • W is heterocyclyl selected from imidazolinyl, imidazolyl, oxazolyl, pyrazolyl, pyyrohdinyl, thiazolyl and pyridyl. More preferably, W is selected from imidazolyl and pyridyl.
  • X represents aryl.
  • X can represent phenyl.
  • m is 0 or 2.
  • n and p are 0, 1 , 2 or 3.
  • a subset of compounds of the invention is represented by formula la:
  • R 3 , R 4 , A 3 , RK, Ry, X, m, n, p and r are as originally defined;
  • each R 1 a nd R2 is independently selected from hydrogen and Cl -C6 alkyl; each R l b is independently selected from: hydrogen, aryl, heterocyclyl, C3-10 cycloalkyl, C2-6 alkenyl, R 8 0-, -N(R 8 )2 and C1 -C6 alkyl unsubstituted or substituted by aryl, heterocyclyl, cycloalkyl, alkenyl,
  • R6 is independently selected from: hydrogen, C1 -C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -C6 perfluoroalkyl, F, Cl, R 0-, R C(0)NR 8 -, CN, N ⁇ 2, (R 8 )2N-C(NR 8 )-, R 8 C(0)-, R OC(0)-, -N(R )2, or R 9 OC(0)NR 8 -, and C1 -C6 alkyl substituted by -C6 perfluoroalkyl, R 8 0-, R C(0)NR 8 -, (R 8 )2N-C(NR 8 )-, R C(0)-, R OC(0)-, -N(R )2 and R 9 OC(0)NR 8 -;
  • R 7 represents H or Ci - 6 alkyl
  • a l and A 2 are independently selected from: a bond,
  • -CH CH-, -C ⁇ C-, -C(O)-, -C(0)NR 8 -, O, -N(R 8 )- and S(0) m ;
  • V is selected from: hydrogen; aryl; heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a a heteroatom selected from O, S, and N, and C2-C2O alkenyl, provided that V is not hydrogen if A 1 is S(0) m and V is not hydrogen if Al is a bond and A 2 is S(0) m; provided that when V is heterocycle, attachment of V to R6 and to A l is through a substitutable ring carbon.
  • a second subset of compounds of the present invention is represented by formula lb:
  • R 7 is selected from: hydrogen and C 1 -C alkyl
  • V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; aryl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl,
  • V is not hydrogen if Al is S(0)m and V is not hydrogen if A 1 is a bond, n is 0 and A 2 is S(0)m; provided that when V is heterocycle, attachment of V to R and to Al is through a substitutable ring carbon; and
  • W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
  • a third subset of compounds of the present invention is represented by formula Ic:
  • R 7 is selected from: hydrogen and C1 -C6 alkyl
  • V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl, and thienyl, aryl, C1 -C2O alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if Al is S(0)m and V is not hydrogen if A l is a bond, n is 0 and A 2 is S(0)m; provided that when V is heterocycle, attachment of V to R 8 and to Al is through a substitutable ring carbon; and
  • W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
  • each R 2 is independently selected from hydrogen and C1 -C6 alkyl
  • R3, R4, A 3 , RX, R9, X, m and p are as originally defined;
  • R6 is selected from the group consisting of: hydrogen, C1 -C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -C6 perfluoroalkyl, F, Cl, R 0-, R 8 C(0)NR 8 -, CN, NO2, (R 8 )2N-C(NR 8 )-, R 8 C(0)-, R 8 OC(0)-, -N(R )2, or R 9 OC(0)NR 8 - and C 1 -C6 alkyl substituted by C 1 -C6 perfluoroalkyl, R 8 0-, R C(0)NR 8 -, (R 8 )2N-C(NR 8 )-, R 8 C(0), R 8 OC(0)-, -N(R )2 or R OC(0)NR 8 -.
  • a fifth subset of compounds of the invention is represented by formula Ie:
  • each R2 is independently selected from: hydrogen and C1-C6 alkyl
  • R3 and R4 are independently selected from H, F, Cl, Br, N(R 8 )2, CF3, N02, (R 8 )0-, (R 9 )S(0) m -, (R 8 )C(0)NH-, H2N-C(NH)- (R )C(0)-, (R )OC(0)-, N3, CN, (R 9 )OC(0)NR 8 -, C1 -C2O alkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heterocyclyl;
  • R 8 , R 9 > m and p are as originally defined.
  • the pharmaceutically acceptable salts of the compounds of this invention include the conventional non-toxic salts of the compounds of this invention as formed, e.g., from non-toxic inorganic or organic acids.
  • such conventional non-toxic salts include those derived from inorganic acids such as hydrochloric, hydrobromic, sulfuric, sulfamic, phosphoric, nitric and the like: and the salts prepared from organic acids such as acetic, propionic, succinic, glycolic, stearic, lactic, malic, tartaric, citric, ascorbic, pamoic, maleic, hydroxymaleic, phenylacetic, glutamic, benzoic, salicylic, sulfanilic, 2-acetoxy-benzoic, fumaric, toluenesulfonic, methanesulfonic, ethane disulfonic, oxalic, isethionic, trifluoroacetic and the like.
  • the pharmaceutically acceptable salts of the compounds of this invention can be synthesized from the compounds of this invention which contain a basic moiety by conventional chemical methods.
  • the salts are prepared either by ion exchange chromatography or by reacting the free base with stoichiometric amounts or with an excess of the desired salt-forming inorganic or organic acid in a suitable solvent or various combinations of solvents.
  • Reactions used to generate the compounds of this invention are prepared by employing reactions as shown in the Schemes, in addition to other standard manipulations such as ester hydrolysis, cleavage of protecting groups, etc., as may be known in the literature or exemplified in the experimental procedures.
  • Substituents R and R CH2-, as shown in the Schemes represent the substituents R 8 , R 9 and others, depending on the compound of the instant invention that is being synthesized.
  • the variable p' represents p-1.
  • Schemes 1 -2 illustrate the synthesis of one of the preferred embodi ⁇ ments of the instant invention, wherein the variable W is present as an imidazolyl moiety that is substituted with a suitably substituted benzyl group.
  • Substituted protected imidazoles can be prepared by methods such as those described by F. Schneider, Z. Physiol. Chem., 3:206-210 (1961 ) and C.P. Stewart, Biochem. Journal, 17: 130-133( 1923).
  • Benzylation and deprotection of the imidazole alkanol provides intermediate HI which can be oxidized to the corresponding aldehyde IV.
  • X is shown as a phenyl ring, other aryl and heteroaryl groups can be substituted therein without departing from the invention.
  • the aldehyde whose synthesis is illustrated in Scheme 1 may be reacted with a suitably substituted aralkyne, to provide the intermediate compound V.
  • Compound V can be selectively hydrogenated across the unsaturated bond under standard conditions, such as those illustrated, to provide Compound VI.
  • blocking groups are readily removable, i.e., they can be removed, if desired, by procedures which will not cause cleavage or other disruption of the remaining portions of the molecule.
  • procedures include chemical and enzymatic hydrolysis, treatment with chemical reducing or oxidizing agents under mild conditions, treatment with fluoride ion, treatment with a transition metal catalyst and a nucleophile and catalytic hydrogenation.
  • hydroxyl protecting groups examples include: t-butylmethoxyphenylsilyl, t-butoxydiphenylsilyl, trimethylsilyl, triethylsilyl, o-nitrobenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, benzyloxycarbonyl, t-butyloxycarbonyl, 2,2,2-trichloroethyloxy- carbonyl and allyloxycarbonyl.
  • Preferred hydroxyl protecting groups are trimethylsilyl and triethylsilyl.
  • carboxyl protecting groups are: benzhydryl, o-nitrobenzyl, p-nitrobenzyl, 2-naphthylmethyl, allyl, 2-chloroallyl, benzyl, 2,2,2-trichloroethyl, trimethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, 2-(trimethylsilyl)ethyl, phenacyl, p-methoxybenzyl, acetonyl, p-methoxyphenyl, 4-pyridylmethyl and t-butyl.
  • a preferred carboxyl protecting group is p-nitrobenzyl.
  • Cancers which may be treated with the compounds of this invention include, but are not limited to, colorectal carcinoma, exocrine pancreatic carcinoma, myeloid leukemias and neurological tumors. Such tumors may arise by mutations in the ras genes themselves, mutations in the proteins that can regulate Ras activity (i.e., neurofibromin (NF- 1 ), neu, scr, abl , lck, fyn) or by other mechanisms.
  • NF- 1 neurofibromin
  • the compounds of the instant invention inhibit famesyl- protein transferase and famesylation of the oncogene protein Ras.
  • the instant compounds may also inhibit tumor angiogenesis, thereby affecting the growth of tumors (J. Rak et al. Cancer Research, 55:4575- 4580 (1995)).
  • Such anti-angiogenic properties of the instant compounds may also be useful in the treatment of certain forms of blindness related to retinal vascularization.
  • the compounds of this invention are also useful for inhibiting other diseases where Ras proteins are aberrantly activated as a result of oncogenic mutation in other genes (i.e., the Ras gene itself is not activated by mutation to an oncogenic form) with said inhibition being accomplished by the administration of an effective amount of the compounds of the invention to a mammal in need of such treatment.
  • a component of NF- 1 is a benign proliferative disorder.
  • the instant compounds may also be useful in the treatment of viral infections, in particular in the treatment of hepatitis delta and related viruses (J.S. Glenn et al. Science, 256: 1331 - 1333 ( 1992).
  • the compounds of the instant invention are also useful in the prevention of restenosis after percutaneous transluminal coronary angioplasty by inhibiting neointimal formation (C. Indolfi et al. Nature medicine, 1 :541 -545(1995).
  • the instant compounds may also be useful in the treatment and prevention of polycystic kidney disease (D.L. Schaffner et al.
  • the instant compounds may also be useful for the treatment of fungal infections.
  • the compounds of this invention may be administered to mammals, preferably humans, either alone or, preferably, in combina ⁇ tion with pharmaceutically acceptable carriers or diluents, in the form of a pharmaceutical composition, which is comprised of a compound of formula I in combination with a pharmaceutically acceptable carrier.
  • the compounds can be administered orally, topically, rectally. vaginally transdermally or parenterally, including the intravenous, intramuscular, intraperitoneal and subcutaneous routes of administration.
  • the compound is administered, for example, in the form of tablets or capsules, or as a solution or suspension.
  • carriers which are commonly used include lactose and corn starch; lubricating agents, such as magnesium stearate, are commonly added.
  • diluents also include lactose and dried com starch.
  • the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring agents may be added.
  • sterile solutions of the active ingredient are usually prepared, the pH of the solution is suitably adjusted and the product is buffered.
  • the total concentration is controlled to render the preparation substantially isotonic.
  • composition is intended to encompass a product comprising the specified ingredients in the specific amounts, as well as any product which results, directly or indirectly, from combination of the specific ingredients in the specified amounts.
  • the compounds of the instant invention may also be co-administered in therapeutic compositions that also contain other well known therapeutic agents that are selected for their particular usefulness against the condition that is being treated.
  • the instant compounds may be useful in combination with known anti- cancer and cytotoxic agents.
  • the instant compounds may be useful in combination with agents that are effective in the treatment and prevention of NF- 1 , restinosis, polycystic kidney disease, infections of hepatitis delta and related viruses and fungal infections.
  • combination products employ a compound of this invention substantially within the dosage range described below and other pharmaceutically active agent(s) typically within the acceptable dosage range.
  • Compounds of the instant invention may alternatively be used sequentially with known pharmaceutically acceptable agent(s) when a combination formulation is inappropriate.
  • the daily dosage will normally be determined by the prescribing physician, who may vary the dosage according to the age, weight, and response of the individual patient, as well as the severity of the patient's condition.
  • a suitable amount of compound is administered to a mammal undergoing treatment for cancer.
  • Administration occurs in an amount between about 0.1 mg/kg of body weight to about 60 mg/kg of body weight per day, preferably of between 0.5 mg/kg of body weight to about 40 mg/kg of body weight per day.
  • the compounds of the instant invention are also useful as a component in an assay to rapidly determine the presence and quantity of famesyl-protein transferase (FPTase) in a composition.
  • FPTase famesyl-protein transferase
  • the composition to be tested may be divided and the two portions contacted with mixtures which comprise a known substrate of FPTase (for example a tetrapeptide having a cysteine at the amine terminus) and famesyl pyrophosphate and, in one of the mixtures, a compound of the instant invention.
  • the chemical content of the assay mixtures may be determined by well known immuno- logical, radiochemical or chromatographic techniques. Because the compounds of the instant invention are selective inhibitors of FPTase, absence or quantitative reduction of the amount of substrate in the assay mixture without the compound of the instant invention relative to the presence of the unchanged substrate in the assay containing the instant compound is indicative of the presence of FPTase in the composition to be tested.
  • potent inhibitor compounds of the instant invention may be used in an active site titration assay to determine the quantity of enzyme in the sample.
  • a series of samples composed of aliquots of a tissue extract containing an unknown amount of farnesyl - protein transferase, an excess amount of a known substrate of FPTase (for example a tetrapeptide having a cysteine at the amine terminus) and famesyl pyrophosphate are incubated for an appropriate period of time in the presence of varying concentrations of a compound of the instant invention.
  • concentration of a sufficiently potent inhibitor i.e., one that has a Ki substantially smaller than the concentration of enzyme in the assay vessel
  • concentration of a sufficiently potent inhibitor i.e., one that has a Ki substantially smaller than the concentration of enzyme in the assay vessel
  • Step B Preparation of l -triphenylmethyl-4-
  • the filtrate was concentrated in vacuo to a volume 100 mL, reheated at 60°C for another two hours, cooled to room temperature, and concentrated in vacuo to provide a pale yellow solid. All of the solid material was combined, dissolved in 500 mL of methanol, and warmed to 60°C. After two hours, the solution was reconcentrated in vacuo to provide a white solid which was triturated with hexane to remove soluble materials. Removal of residual solvents in vacuo provided the titled product hydrobromide as a white solid (50.4 g, 67% yield, 89% purity by HPLC) which was used in the next step without further purification.
  • Step D Preparation of 1 -(4-cyanobenzy l)-5-
  • Step E Preparation of l-(4-cyanobenzyl)-5- imidazolecarboxaldehyde
  • Step F Preparation of ( ⁇ )-l-(4-cyanobenzyl)-5-[( l-hydroxy-3- phenyl)-2-propynyllimidazole hydrochloride
  • phenylacetylene (0.172 mL, 1.56 mmol)
  • n-butyllithium 0.530 mL, 2.5 M in hexanes, 1.32 mmol.
  • the aldehyde from Step E (254 mg, 1.20 mmol) was added, and the reaction was stirred for 30 minutes. The reaction was quenched with sat. aq.
  • Step A Preparation of 3-(4-cyanobenzyl)pyridin-4-carboxylic acid methyl ester
  • 4-cyanobenzyl bromide 625 mg, 3.27 mmol
  • dry THF 4mL
  • activated Zn dust; 250 mg
  • dry THF 2 mL
  • the ice-bath was removed and the slurry was stirred at room temperature for a further 30 min.
  • 3-bromopyridin-4- carboxylic acid methyl ester 540 mg. 2.5 mmol
  • dichlorobis(triphenylphosphine)nickel II
  • the title compound was obtained by sodium borohydride (300 mg) reduction of the ester from Step A (415 mg) in methanol (5 mL) at room temperature. After stirring for 4 h the solution was evaporated and the product was purified on silica gel, eluting with 2% methanol in chloroform to give the title compound.
  • Step C Preparation of 3-(4-cyanobenzyl -4-pyridinal
  • the title compound was obtained by activated manganese dioxide ( 1.0g) oxidation of the alcohol from Step B (240 mg, 1.07 mmol) in dioxane (10 mL) at reflux for 30 min. Filtration and evaporation of the solvent provided title compound, mp 80-83°C.
  • Step D Preparation of ( ⁇ )-3-(4-cyanobenzyl)-4-[( l-hydroxy-3- phenvP-2-propynyllpyridine hydrochloride
  • the titled compound is prepared from the pyridinal from Step C using the procedured in Step F of Example 1.
  • the product is purified by silica gel chromatography, then taken up in CH 2 CI 2 and treated with excess 1 M HCl/ether solution, and concentrated in vacuo to provide the titled product hydrochloride.
  • Step A l -Trityl-4-(4-Cyanobenzyl)-imidazole.
  • THF tetrahydrofuran
  • dibromoethane 0.315ml, 3.60mmol
  • oc bromo-p-toluinitrile 9.33g, 47.6mmol
  • Step B l -(4-Biphenylmethyl)-5-(4-cyanobenzyl)imidazole hydochloride salt
  • a Grignard reagent freshly prepared from 4-bromo[ l , l '- biphenyl] (1 16 mg, 500 ⁇ mol) and magnesium turnings (18 mg, 730 ⁇ mol) in dry THF (500 ⁇ l) was added to a dry Argon-purged 3mL flask containing the aldehyde (105 mg, 500 ⁇ mol) in dry THF (200 ⁇ L) with vigorous stirring at room temperature. After 1 hour the reaction was quenched with sat. NH CI (5 mL) and distributed between EtOAc (50 mL) and H 2 O (50 mL). The organic phase was evaporated and the residue was chromatographed on silica gel (CHCl 3 -MeOH (20: 1 )) to yield title (1 17 mg). FAB ms (M+l ) 366.25.
  • Step A lH-Imidazole-4- acetic acid methyl ester hydrochloride A solution of lH-imidazole-4-acetic acid hydrochloride
  • Step C [l-(4-Cyanobenzyl)-lH-imidazol-5-yl]acetic acid methyl ester.
  • Step E 5-(- 1 -(4-Cyanobenzyl)-imidazolylkthylmethanesulfonate.
  • a solution of 5-[l -(4-cyanobenzyl)- l H-imidazolyl]ethanol (0.500 g, 2.20 mmol) in methylene chloride (6 ml) at 0°C was treated with Hunig's base (0.460ml, 2.64mmol) and methanesulfonyl chloride (0.204ml, 2.64mmol).
  • Step F 1 - ⁇ [ 1 -(4-Cyanobenzyl)- 1 H-imidazol-5-yl]ethyl ⁇ -4-phenyl imidazole bis hydrochloride salt.
  • the residue was purified by chromatography (Si ⁇ 2, gradient elution, 2-5% ammonium hydoxide: acetonitrile.
  • the resulting material was converted to the HCI salt by treating an EtOAc solution of the imidazole with gasseous HCI and evaporating the solvent in vacuo.
  • Bovine FPTase was assayed in a volume of 100 ⁇ l containing 100 mM -(2-hydroxy ethyl) piperazine- N'-(2-ethane sulfonic acid) (HEPES), pH 7.4, 5 mM MgCl2, 5 mM dithiothreitol (DTT), 100 mM HJ-farnesyl diphosphate ([ 3 H]-FPP; 740 CBq/mmol, New England Nuclear), 650 nM Ras-CVLS and 10 ⁇ g/ml FPTase at 31 °C for 60 min. Reactions were initiated with FPTase and stopped with 1 ml of 1.0 M HCL in ethanol.
  • Precipitates were collected onto filter-mats using a TomTec Mach II cell harvester, washed with 100% ethanol, dried and counted in an LKB ⁇ -plate counter.
  • the assay was linear with respect to both substrates, FPTase levels and time; less than 10% of the [ 3 H]-FPP was utilized during the reaction period.
  • Purified compounds were dissolved in 100% dimethyl sulfoxide (DMSO) and were diluted 20-fold into the assay. Percentage inhibition is measured by the amount of incorporation of radioactivity in the presence of the test compound when compared to the amount of incorporation in the absence of the test compound.
  • DMSO dimethyl sulfoxide
  • Human FPTase was prepared as described by Omer et aL, Biochemistry 32:5167-5176 (1993). Human FPTase activity was assayed as described above with the exception that 0.1 % (w/v) polyethylene glycol 20,000, 10 ⁇ M ZnCl 2 and 100 nM Ras-CVIM were added to the reaction mixture. Reactions were performed for 30 min., stopped with 100 ⁇ l of 30% (v/v) trichloroacetic acid (TCA) in ethanol and processed as described above for the bovine enzyme.
  • TCA trichloroacetic acid
  • the compounds of the instant invention described in the above Examples 1 -7 were tested for inhibitory activity against human FPTase by the assay described above and were found to have IC50 of 50 ⁇ M.
  • the cell line used in this assay is a v-ras line derived from either Ratl or NIH3T3 cells, which expressed viral Ha-ras p21.
  • the assay is performed essentially as described in DeClue, J.E. et ah, Cancer Research 51 :712-717, (1991). Cells in 10 cm dishes at 50-75% confluency are treated with the test compound (final concentration of solvent, methanol or dimethyl sulfoxide, is 0.1 %).
  • the cells After 4 hours at 37°C, the cells are labelled in 3 ml methionine-free DMEM supple- meted with 10% regular DMEM, 2% fetal bovine serum and 400 mCi[35s]methionine (1000 Ci/mmol). After an additional 20 hours, the cells are lysed in 1 ml lysis buffer (1 % NP40/20 mM HEPES, pH 7.5/5 mM MgCl2/lmM DTT/10 mg/ml aprotinen/2 mg/ml leupeptin/2 mg/ml antipain/0.5 mM PMSF) and the lysates cleared by centrifugation at 100,000 x g for 45 min.
  • 1 ml lysis buffer (1 % NP40/20 mM HEPES, pH 7.5/5 mM MgCl2/lmM DTT/10 mg/ml aprotinen/2 mg/ml leupeptin/2 mg/ml antipain/0.5 mM PMSF
  • the immunoprecipitates are washed four times with IP buffer (20 nM HEPES, pH 7.5/1 mM EDTA/1 % Triton X- 100.0.5% deoxycholate/0.1 %/SDS/0.1 M NaCl) boiled in SDS-PAGE sample buffer and loaded on 13% acrylamide gels. When the dye front reached the bottom, the gel is fixed, soaked in Enlightening, dried and autoradiographed. The intensities of the bands corresponding to famesylated and nonfamesylated ras proteins are compared to determine the percent inhibition of famesyl transfer to protein.
  • IP buffer (20 nM HEPES, pH 7.5/1 mM EDTA/1 % Triton X- 100.0.5% deoxycholate/0.1 %/SDS/0.1 M NaCl
  • Rat 1 cells transformed with either v-ras, v-raf, or v-mos are seeded at a density of 1 x 10 4 cells per plate (35 mm in diameter) in a 0.3% top agarose layer in medium A (Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum) over a bottom agarose layer (0.6%). Both layers contain 0.1 % methanol or an appropriate concentration of the instant compound (dissolved in methanol at 1000 times the final concentration used in the assay).
  • the cells are fed twice weekly with 0.5 ml of medium A containing 0.1 % methanol or the concentration of the instant compound. Photomicrographs are taken 16 days after the cultures are seeded and comparisons are made.

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Abstract

The present invention is directed to compounds which inhibit farnesyl-protein transferase (FTase) and the farnesylation of the oncogene protein Ras. The invention is further directed to chemotherapeutic compositions containing the compounds of this invention and methods for inhibiting farnesyl-protein transferase and the farnesylation of the oncogene protein Ras.

Description

TITLE OF THE INVENTION
INHIBITORS OF FARNESYL-PROTEIN TRANSFERASE
BACKGROUND OF THE INVENTION
The present invention relates to compounds which inhibit farnesyl protein transferase, a protein which is implicated in the oncogenic pathway mediated by Ras. The Ras proteins (Ha-Ras, Ki4a- Ras, Ki4b-Ras and N-Ras) are part of a signalling pathway that links cell surface growth factor receptors to nuclear signals initiating cellular proliferation. Biological and biochemical studies of Ras action indicate that Ras functions like a G-regulatory protein. In the inactive state, Ras is bound to GDP. Upon growth factor receptor activation Ras is induced to exchange GDP for GTP and undergoes a conformational change. The GTP-bound form of Ras propagates the growth stimulatory signal until the signal is terminated by the intrinsic GTPase activity of Ras, which returns the protein to its inactive GDP bound form (D.R. Lowy and D.M. Willumsen, Ann. Rev. Biochem. 62:851 -891 ( 1993)). Mutated ras genes ( a-ras, Ki4a-πw, Ki4b-ra.s and N-ras) are found in many human cancers, including colorectal carcinoma, exocrine pancreatic carcinoma, and myeloid leukemias. The protein products of these genes are defective in their GTPase activity and constitutively transmit a growth stimulatory signal. Ras must be localized to the plasma membrane for both normal and oncogenic functions. At least 3 post-translational modifications are involved with Ras membrane localization, and all 3 modifications occur at the C-terminus of Ras. The Ras C-terminus contains a sequence motif termed a "CAAX" or "Cys-Aaa^ -Aaa^-Xaa" box (Cys is cysteine, Aaa is an aliphatic amino acid, the Xaa is any amino acid) (Willumsen et al, Nature 370:583-586 ( 1984)). Depend¬ ing on the specific sequence, this motif serves as a signal sequence for the enzymes famesyl-protein transferase or geranylgeranyl-protein transferase, which catalyze the alkylation of the cysteine residue of the CAAX motif with a C15 or C20 isoprenoid, respectively. (S. Clarke., Ann. Rev. Biochem. 67 :355-386 (1992); W.R. Schafer and J. Rine, Ann. Rev. Genetics 30:209-231 (1992)). Ras proteins are known to undergo post-translational famesylation. Other farnesylated proteins include the Ras-related GTP-binding proteins such as Rho, fungal mating factors, the nuclear lamins, and the gamma subunit of transducin. James, et al., J. Biol. Chem. 269, 14182 (1994) have identified a peroxisome associated protein Pxf which is also farnesylated. James, et al., have also suggested that there are farnesylated proteins of unknown structure and function in addition to those listed above.
Inhibition of famesyl-protein transferase has been shown to block the growth of Ras-transformed cells in soft agar and to modify other aspects of their transformed phenotype. It has also been demonstrated that certain inhibitors of famesyl-protein transferase selectively block the processing of the Ras oncoprotein intracellularly (N.E. Kohl et al, Science, 260: 1934-1931 ( 1993) and G.L. James et al. Science, 260: 1931-1942 ( 1993). Recently, it has been shown that an inhibitor of famesyl-protein transferase blocks the growth of ras- dependent tumors in nude mice (N.E. Kohl et al, Proc. Natl. Acad. Sci U.S. A . , 91 :9141 -9145 ( 1994) and induces regression of mammary and salivary carcinomas in ras transgenic mice (N.E. Kohl et al. Nature Medicine, 1 :792-797 ( 1995).
Indirect inhibition of famesyl-protein transferase in vivo has been demonstrated with lovastatin (Merck & Co., Rahway, NJ) and compactin (Hancock et al, ibid; Casey et al, ibid; Schafer et al, Science 245:319 (1989)). These drugs inhibit HMG-CoA reductase, the rate limiting enzyme for the production of polyisoprenoids including famesyl pyrophosphate. Famesyl-protein transferase utilizes famesyl pyrophosphate to covalently modify the Cy thiol group of the Ras CAAX box with a famesyl group (Reiss et al. Cell, 62:81 -88 ( 1990); Schaber et al, J. Biol Chem., 265: 14701 - 14704 ( 1990); Schafer et al., Science, 249: 1 133- 1 139 (1990); Manne et al, Proc. Natl. Acad. Sci USA, #7:7541 -7545 (1990)). Inhibition of famesyl pyrophosphate biosynthesis by inhibiting HMG-CoA reductase blocks Ras membrane localization in cultured cells. However, direct inhibition of famesyl- protein transferase would be more specific, and thus preferable.
Inhibitors of famesyl-protein transferase (FPTase) have been described in two general classes. The first are analogs of fa esyl diphosphate (FPP), while the second class of inhibitors is related to the protein substrates (e.g., Ras) for the enzyme. The peptide derived inhibitors that have been described are generally cysteine containing molecules that are related to the CAAX motif that is the signal for protein prenylation. (Schaber et al, ibid; Reiss et. al, ibid; Reiss et al, PNAS, 88:132-136 ( 1991)). Such inhibitors may inhibit protein prenylation while serving as altemate substrates for the famesyl-protein transferase enzyme, or may be purely competitive inhibitors (U.S. Patent 5,141 ,851 , University of Texas; N.E. Kohl et al, Science, 260: 1934-1931 (1993); Graham, et al., J. Med. Chem., 37, 725 ( 1994)). It has recently been reported that FPT-ase inhibitors also inhibit the proliferation of vascular smooth muscle cells and are therefore useful in the prevention and treatment of arteriosclerosis and diabetic disturbance of blood vessels (JP H7-1 12930).
It has recently been disclosed that certain tricyclic compounds which optionally incorporate a piperidine moiety are inhibitors of FPTase (WO 95/10514, WO 95/10515 and WO 95/10516). Imidazole-containing inhibitors of famesyl protein transferase have also been disclosed (WO 95/09001 and EP 0 675 1 12 A l).
SUMMARY OF THE INVENTION
The present invention addresses a compound of formula I:
- A1(CR1 a 2)nA2(CR1 b 2)n I or a pharmaceutically acceptable salt thereof, wherein: R 1 a, R 1 b an£j R2 are independently selected from the group consisting of: hydrogen, aryl, substituted aryl, heterocyclyl, C3-C 10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, R 0-, R9S(0)m- wherein m is 0, 1 or 2, R C(0)NR8-, CN, Nθ2, (R8)2NC(NR8)-, R8C(0)-, R8OC(0)-, N3, -N(R8)2, R9OC(0)NR8- and C1 -C6 alkyl, unsubstituted or substituted by 1 -3 groups selected from the group consisting of: halo, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, R80-, R9S(0)m-, R8C(0)NR8-, CN, (R8)2NC(NR8)-, R8C(0)-, R8OC(0)-, N3, -N(R )2 and R9θC(0)NR8-;
R3 and R^ are independently selected from the group consisting of: H, F, Cl, Br, -NR82, CF3, Nθ2, R80-, R9S(0)m-, CF3(CH2)n-0-, R8C(0)NH-, H2NC(NH)-, R C(0)-, R8OC(0)-, N3, CN, R9OC(0)NR8-, Cl -C20 alkyl, substituted or unsubstituted aryl and substituted or unsubstituted heterocyclyl;
A 3 is selected from: -C≡C — , — R C CR ~" , -C(O)- , aryl, heteroaryl or a bond; provided that when A^ is heteroaryl, attachment of A^ the remainder of the molecule is through substitutable heteroaryl ring carbons;
X represents aryl or heteroaryl; provided that when X is heteroaryl, attachment of X the remainder of the molecule is through substitutable heteroaryl ring carbons;
R° is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, Ci-6 perfluoroalkyl, F, Cl, Br, R 0-, R9S(0)m-, R8C(0)NR8-, CN, Nθ2, (R8)2NC(NR8)-, R C(0)-, R8OC(0)-, 1 3, -N(R8)2, R9OC(0)NR8- and C1 -C6 alkyl unsubstituted or substituted by 1-3 groups selected from: aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R 0-, R9S(0)m-, R8C(0)NR*-, CN, (R )2NC(NR8)-, R C(0)-, R OC(0)-, N3, -N(R8)2 and R OC(0)NR8-;
R7 is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, C\.6 perfluoroalkyl, F, Cl, Br, R90-, R9S(0)m-, R C(0)NR8, CN, Nθ2, (R )2NC(NR8)-, R8C(0)-, R8OC(0)-, N3, -N(R )2, R9OC(0)NR8- and C1 -C6 alkyl unsubstituted or substituted by 1 -3 groups selected from: aryl, heterocyclyl, C3-C10 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R80-, R9S(0)m-, R8C(0)NR*-, CN, (R >2NC(NR8)-, R C(0)-, R OC(0)-, N3, -N(R )2 and R90C(0)NR8-;
each R8 is independently selected from hydrogen, Cl -C6 alkyl, aryl and aralkyl;
each R9 is independently selected from C1-C alkyl and aryl;
A l and A2 are independently selected from the group consisting of: a bond, -CH=CH-, -C≡C-, -C(O)-, -C(0)NR8-, -NR C(0)-, -0-, -N(R8)-, -S(0)2N(R8)-, -N(R )S(0)2-, and S(0)m:
V is selected from the group consisting of: hydrogen, heterocyclyl, aryl, C1 -C2O alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if A^ is S(0)m and V is not hydrogen if A 1 is a bond, n is 0 and A2 is S(0)m; provided that when V is heterocyclyl, attachment of V to R6 and to A l is through a substitutable ring carbon;
W represents heterocyclyl; each n and p independently represents 0, 1 , 2, 3 or 4; r is 0 to 5, provided that r is 0 when V is hydrogen, and t is 1.
DETAILED DESCRIPTION OF THE INVENTION
The compounds of this invention are useful in the inhibition of famesyl-protein transferase and the famesylation of the oncogene protein Ras, and thus are useful for the treatment of cancer. The compounds of the present invention may have asymmetric centers and occur as racemates, racemic mixtures and as individual diastereomers, with all possible isomers, including optical isomers, being included in the present invention.
When any variable (e.g. aryl, heterocycle, R l , R2 etc.) occurs more than one time in any constituent, each definition is independent.
The term "alkyl" and the alkyl portion of alkoxy, aralkyl and similar terms, is intended to include branched and straight-chain saturated aliphatic hydrocarbon groups having the specified number of carbon atoms, or 1 -6 carbon atoms if unspecified. Cycloalkyl means 1 -2 carbocyclic rings which are saturated and contain from 3- 10 atoms.
"Halogen" or "halo" as used herein means fluoro, chloro, bromo and iodo.
As used herein, "aryl" and the aryl portion of aralkyl, are intended to mean any stable monocyclic or bicyclic carbon ring of up to 7 members in each ring, wherein at least one ring is aromatic. Examples of such aryl elements include phenyl, naphthyl, tetrahydronaphthyl, indanyl, biphenyl, phenanthryl, anthryl or acenaphthyl. A preferred aralkyl group is benzyl. The terms heterocyclyl, heterocycle and heterocyclic, as used herein, mean a 5- to 7-membered monocyclic or 8- to 1 1 - membered bicyclic heterocyclic rings, either saturated or unsaturated, aromatic, partially aromatic or non-aromatic, and which consist of carbon atoms and from one to four heteroatoms selected from the group consisting of N, O, and S. Thus, it includes any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. The ring or ring system may be attached at any heteroatom or carbon atom which results in a stable structure. It optionally contains 1 -3 carbonyl groups. Examples of such heterocycles include, but are not limited to, azepinyl, benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothiopyranyl sulfone, furyl, imidazolidinyl, imidazolinyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolidinyl, isothiazolyl, isothiazolidinyl, morpholinyl, naphthyridinyl, oxadiazolyl, 2-oxoazepinyl, oxazolyl, 2- oxopyrrolidinyl, pyridyl, pyrazinyl, pyrazolidinyl, pyrazolyl, pyridazinyl, pyrimidinyl, pyrrolidinyl, pyrrolyl, quinazolinyl, quinolinyl, quinoxalinyl, tetrahydrofuryl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, thiamorpholinyl, thiamorpholinyl sulfoxide, thiazolyl, thiazolinyl, thienofuryl, thienothienyl and thienyl.
"Heteroaryl" is a subset of heterocyclic as defined above, and means a monocyclic or bicyclic ring system, with up to 7 members in each ring, wherein at least one ring is aromatic and wherein from one to four carbon atoms are replaced by heteroatoms selected from the group consisting of N, O and S. Examples include benzimidazolyl, benzisoxazolyl, benzofurazanyl, benzopyranyl, benzothiopyranyl, benzofuryl, benzothiazolyl, benzothienyl, benzoxazolyl, chromanyl, cinnolinyl, dihydrobenzofuryl, dihydrobenzothienyl, dihydrobenzothiopyranyl, dihydrobenzothiopyranyl sulfone, furyl, imidazolyl, indolinyl, indolyl, isochromanyl, isoindolinyl, isoquinolinyl, isothiazolyl, naphthyridinyl, oxadiazolyl, pyridyl, pyrazinyl, pyrazolyl, pyridazinyl, pyrimidinyl, pyrrolyl, quinazolinyl, quinolinyl, quinoxalinyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, thiazolyl, thienofuryl, thienothienyl and thienyl. Lines drawn into ring systems from substituents indicate that the bond may be attached to any of the substitutable ring carbon atoms.
Substituted alkyl, substituted aryl, substituted heterocyclyl and substituted cycloalkyl mean alkyl, aryl, heterocyclyl and cycloalkyl groups, respectively, having from 1 -3 substituents which are selected from: halo, aryl, heterocyclyl, C3-10 cycloalkyl, C2-6 alkenyl, C2-6 alkynyl, R 0-, R9S(0)m-, R»C(0)NR«-, CN, (R«)2NC(NR«)-, R«C(0)-, R«OC(0)-, N3, -N(R8)2 and R^OC(0)NRx-. When for example, a substituted alkyl group is substituted with a "substituted aryl group", the aryl portion is substituted with 1 -3 groups as defined above.
Preferably 1-2 groups are present on substituted alkyl, substituted aryl, substituted heterocyclyl and substituted cycloalkyl, which are selected from: halo, aryl, R«0-, CN, RxC(0)- and -N(RX)2. Preferably, Rla ?Rlb ancj R2 are independently selected from: hydrogen, -N(R8)2, R8C(0)NR8- or unsubstituted or substituted C1 -C6 alkyl wherein the substituent on the substituted C1 -C6 alkyl is selected from unsubstituted or substituted aryl, -N(R )2, R80- and R C(0)NR8-. Preferably, R3 and R4 are selected from: hydrogen, C 1 -C6 alkyl, Br, Cl, F, R«0-, and CF3.
In a preferred group of compounds, A represents -C≡C — , -CR8=CR8-, -C(O)- or a bond. A particularly preferred group of compounds within this subset includes compounds of formula I wherein A 3 represents -C≡C or a bond.
Another preferred group of compounds includes the compounds of formula I wherein A3 represents aryl or heteroaryl. Preferably R6 represents CN. Preferably, R^represents hydrogen, unsubstituted or substituted C l -C6 alkyl.
Preferably, Rx represents H or Cj-6 alkyl, and R9 is Ci -6 alkyl.
Preferably, A ^ and A2 are independently selected from: a bond, -C(0)NR8-, -NR8C(0)-, -O-, -N(R8)-, -S(0)2N(R8)- and- N(R )S(0)2-.
Preferably, V is selected from hydrogen, heterocyclyl and aryl. More preferably V is phenyl. Preferably, W is heterocyclyl selected from imidazolinyl, imidazolyl, oxazolyl, pyrazolyl, pyyrohdinyl, thiazolyl and pyridyl. More preferably, W is selected from imidazolyl and pyridyl.
Preferably X represents aryl. In particular, X can represent phenyl. Preferably, m is 0 or 2.
Preferably n and p are 0, 1 , 2 or 3.
A subset of compounds of the invention is represented by formula la:
wherein:
R3, R4, A3, RK, Ry, X, m, n, p and r are as originally defined;
each R 1 a nd R2 is independently selected from hydrogen and Cl -C6 alkyl; each Rl b is independently selected from: hydrogen, aryl, heterocyclyl, C3-10 cycloalkyl, C2-6 alkenyl, R80-, -N(R8)2 and C1 -C6 alkyl unsubstituted or substituted by aryl, heterocyclyl, cycloalkyl, alkenyl,
R80- and -N(R8)2; R6 is independently selected from: hydrogen, C1 -C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -C6 perfluoroalkyl, F, Cl, R 0-, R C(0)NR8-, CN, Nθ2, (R8)2N-C(NR8)-, R8C(0)-, R OC(0)-, -N(R )2, or R9OC(0)NR8-, and C1 -C6 alkyl substituted by -C6 perfluoroalkyl, R80-, R C(0)NR8-, (R8)2N-C(NR8)-, R C(0)-, R OC(0)-, -N(R )2 and R9OC(0)NR8-;
R7 represents H or Ci -6 alkyl;
A l and A2 are independently selected from: a bond,
-CH=CH-, -C≡C-, -C(O)-, -C(0)NR8-, O, -N(R8)- and S(0)m;
and V is selected from: hydrogen; aryl; heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a a heteroatom selected from O, S, and N, and C2-C2O alkenyl, provided that V is not hydrogen if A 1 is S(0)m and V is not hydrogen if Al is a bond and A2 is S(0)m; provided that when V is heterocycle, attachment of V to R6 and to A l is through a substitutable ring carbon.
A second subset of compounds of the present invention is represented by formula lb:
V - A1 (CR1 a 2)nA2(CR1b 2)n lb
wherein: R la, Ri b, R2, A1 , A2, R3, R4, R6, R«, R9, X, m, n, p and r are as originally defined;
R7 is selected from: hydrogen and C 1 -C alkyl; V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; aryl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl,
provided that V is not hydrogen if Al is S(0)m and V is not hydrogen if A 1 is a bond, n is 0 and A2 is S(0)m; provided that when V is heterocycle, attachment of V to R and to Al is through a substitutable ring carbon; and
W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
A third subset of compounds of the present invention is represented by formula Ic:
V - A1(CR1a 2)nA2(CR1b 2)n
Ic wherein: R la, Ri b, R2, Al , A2, R3, R4, R6? R8, R9? X J m, n, p and r are as originally defined;
R7 is selected from: hydrogen and C1 -C6 alkyl;
V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl, and thienyl, aryl, C1 -C2O alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if Al is S(0)m and V is not hydrogen if A l is a bond, n is 0 and A2 is S(0)m; provided that when V is heterocycle, attachment of V to R8 and to Al is through a substitutable ring carbon; and
W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
A fourth embodiment of the invention is described in accordance with formula Id:
wherein:
each R2 is independently selected from hydrogen and C1 -C6 alkyl;
R3, R4, A3, RX, R9, X, m and p are as originally defined;
and R6 is selected from the group consisting of: hydrogen, C1 -C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -C6 perfluoroalkyl, F, Cl, R 0-, R8C(0)NR8-, CN, NO2, (R8)2N-C(NR8)-, R8C(0)-, R8OC(0)-, -N(R )2, or R9OC(0)NR8- and C 1 -C6 alkyl substituted by C 1 -C6 perfluoroalkyl, R80-, R C(0)NR8-, (R8)2N-C(NR8)-, R8C(0), R8OC(0)-, -N(R )2 or R OC(0)NR8-. A fifth subset of compounds of the invention is represented by formula Ie:
wherein: X and A3 are as originally defined; each R2 is independently selected from: hydrogen and C1-C6 alkyl;
R3 and R4 are independently selected from H, F, Cl, Br, N(R8)2, CF3, N02, (R8)0-, (R9)S(0)m-, (R8)C(0)NH-, H2N-C(NH)- (R )C(0)-, (R )OC(0)-, N3, CN, (R9)OC(0)NR8-, C1 -C2O alkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heterocyclyl;
and R8, R9> m and p are as originally defined.
Specific examples of compounds of the invention are:
1 and the pharmaceutically acceptable salts and isomers thereof.
The pharmaceutically acceptable salts of the compounds of this invention include the conventional non-toxic salts of the compounds of this invention as formed, e.g., from non-toxic inorganic or organic acids. For example, such conventional non-toxic salts include those derived from inorganic acids such as hydrochloric, hydrobromic, sulfuric, sulfamic, phosphoric, nitric and the like: and the salts prepared from organic acids such as acetic, propionic, succinic, glycolic, stearic, lactic, malic, tartaric, citric, ascorbic, pamoic, maleic, hydroxymaleic, phenylacetic, glutamic, benzoic, salicylic, sulfanilic, 2-acetoxy-benzoic, fumaric, toluenesulfonic, methanesulfonic, ethane disulfonic, oxalic, isethionic, trifluoroacetic and the like.
The pharmaceutically acceptable salts of the compounds of this invention can be synthesized from the compounds of this invention which contain a basic moiety by conventional chemical methods. Generally, the salts are prepared either by ion exchange chromatography or by reacting the free base with stoichiometric amounts or with an excess of the desired salt-forming inorganic or organic acid in a suitable solvent or various combinations of solvents. Reactions used to generate the compounds of this invention are prepared by employing reactions as shown in the Schemes, in addition to other standard manipulations such as ester hydrolysis, cleavage of protecting groups, etc., as may be known in the literature or exemplified in the experimental procedures. Substituents R and R CH2-, as shown in the Schemes, represent the substituents R8, R9 and others, depending on the compound of the instant invention that is being synthesized. The variable p' represents p-1.
These reactions may be employed in a linear sequence to provide the compounds of the invention or they may be used to synthesize fragments which are subsequently joined by the alkylation reactions described in the Schemes.
Synopsis of Schemes The requisite intermediates are in some cases commercially available, or can be prepared according to literature procedures. Schemes 1 -2 illustrate the synthesis of one of the preferred embodi¬ ments of the instant invention, wherein the variable W is present as an imidazolyl moiety that is substituted with a suitably substituted benzyl group. Substituted protected imidazoles can be prepared by methods such as those described by F. Schneider, Z. Physiol. Chem., 3:206-210 (1961 ) and C.P. Stewart, Biochem. Journal, 17: 130-133( 1923). Benzylation and deprotection of the imidazole alkanol provides intermediate HI which can be oxidized to the corresponding aldehyde IV. Also, while X is shown as a phenyl ring, other aryl and heteroaryl groups can be substituted therein without departing from the invention.
The aldehyde whose synthesis is illustrated in Scheme 1 may be reacted with a suitably substituted aralkyne, to provide the intermediate compound V. Compound V can be selectively hydrogenated across the unsaturated bond under standard conditions, such as those illustrated, to provide Compound VI.
Schemes 3- 10 illustrate syntheses of suitably substituted aldehydes useful in the syntheses of the instant compounds wherein the variable W is a pyridyl moiety. Similar synthetic strategies for preparing alkanols that incorporate other heterocyclic moieties for variable W can be discerned from the teachings herein.
Generally the aldehyde is reacted with an appropriately substituted aralkyne using n-BuLi, after which the triple bond can be reduced. As shown in Schemes 2, 4, 6 and 8 reduction of the alkyne triple bond using Pd/BaS04 lproduces the Z-olefin iso er almost exclusively. By substituting sodium bis(2-methoxyethoxy)aIuminum hydride (RED-AL) in toluene, one can readily obtain the E-allylic alcohol from propargylic alkynes used in the present invention. In the preparation methods described herein, reactive groups may remain blocked until the final product is prepared, essentially in protected form, after which a final deprotection step is conducted. These blocking groups are readily removable, i.e., they can be removed, if desired, by procedures which will not cause cleavage or other disruption of the remaining portions of the molecule. Such procedures include chemical and enzymatic hydrolysis, treatment with chemical reducing or oxidizing agents under mild conditions, treatment with fluoride ion, treatment with a transition metal catalyst and a nucleophile and catalytic hydrogenation.
Examples of suitable hydroxyl protecting groups are: t-butylmethoxyphenylsilyl, t-butoxydiphenylsilyl, trimethylsilyl, triethylsilyl, o-nitrobenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, benzyloxycarbonyl, t-butyloxycarbonyl, 2,2,2-trichloroethyloxy- carbonyl and allyloxycarbonyl. Preferred hydroxyl protecting groups are trimethylsilyl and triethylsilyl.
Examples of suitable carboxyl protecting groups are: benzhydryl, o-nitrobenzyl, p-nitrobenzyl, 2-naphthylmethyl, allyl, 2-chloroallyl, benzyl, 2,2,2-trichloroethyl, trimethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, 2-(trimethylsilyl)ethyl, phenacyl, p-methoxybenzyl, acetonyl, p-methoxyphenyl, 4-pyridylmethyl and t-butyl. A preferred carboxyl protecting group is p-nitrobenzyl.
Many other suitable hydroxyl and carboxyl protecting groups are known in the art. See, e.g., T.W. Greene, Protective Groups in Organic Svnthesis. John Wiley & Sons, Inc., 1981 (Chapters 2 and 5).
SCHEME 1
2. N-deprotect
v
Via
SCHEME 3
NaBH4 (excess)
SCHEME6
(predominantly Z isomer)
SCHEME 7
NaBH4 (excess)
SCHEME8
(predominantly Z isomer)
7-
SCHEME9
2. (CH3)3SiCHN2
SCHEME1Q
SCHEME 11
BocNH,
BocNH CHO n-Buϋ,THF
SCHEME1?
SCHEME 13
SCHEME 14
SCHEME 15
0-SiMe2(f-Bu) NaH, DMF0°C
OH
SCHEME 1B
SCHE E Iβ fcont.)
The instant compounds are useful in the treatment of cancer. Cancers which may be treated with the compounds of this invention include, but are not limited to, colorectal carcinoma, exocrine pancreatic carcinoma, myeloid leukemias and neurological tumors. Such tumors may arise by mutations in the ras genes themselves, mutations in the proteins that can regulate Ras activity (i.e., neurofibromin (NF- 1 ), neu, scr, abl , lck, fyn) or by other mechanisms.
The compounds of the instant invention inhibit famesyl- protein transferase and famesylation of the oncogene protein Ras. The instant compounds may also inhibit tumor angiogenesis, thereby affecting the growth of tumors (J. Rak et al. Cancer Research, 55:4575- 4580 (1995)). Such anti-angiogenic properties of the instant compounds may also be useful in the treatment of certain forms of blindness related to retinal vascularization. The compounds of this invention are also useful for inhibiting other diseases where Ras proteins are aberrantly activated as a result of oncogenic mutation in other genes (i.e., the Ras gene itself is not activated by mutation to an oncogenic form) with said inhibition being accomplished by the administration of an effective amount of the compounds of the invention to a mammal in need of such treatment. For example, a component of NF- 1 is a benign proliferative disorder.
The instant compounds may also be useful in the treatment of viral infections, in particular in the treatment of hepatitis delta and related viruses (J.S. Glenn et al. Science, 256: 1331 - 1333 ( 1992). The compounds of the instant invention are also useful in the prevention of restenosis after percutaneous transluminal coronary angioplasty by inhibiting neointimal formation (C. Indolfi et al. Nature medicine, 1 :541 -545(1995).
The instant compounds may also be useful in the treatment and prevention of polycystic kidney disease (D.L. Schaffner et al.
American Journal of Pathology, 142: 1051 - 1060 (1993) and B. Cowley, Jr. et dl.FASEB Journal, 2:A3160 (1988)).
The instant compounds may also be useful for the treatment of fungal infections. The compounds of this invention may be administered to mammals, preferably humans, either alone or, preferably, in combina¬ tion with pharmaceutically acceptable carriers or diluents, in the form of a pharmaceutical composition, which is comprised of a compound of formula I in combination with a pharmaceutically acceptable carrier. The compounds can be administered orally, topically, rectally. vaginally transdermally or parenterally, including the intravenous, intramuscular, intraperitoneal and subcutaneous routes of administration.
For oral use, the compound is administered, for example, in the form of tablets or capsules, or as a solution or suspension. In the case of tablets for oral use, carriers which are commonly used include lactose and corn starch; lubricating agents, such as magnesium stearate, are commonly added. For oral administration in capsule form, diluents also include lactose and dried com starch. When aqueous suspensions are required for oral use, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring agents may be added. For intramuscular, intraperi¬ toneal, subcutaneous and intravenous use, sterile solutions of the active ingredient are usually prepared, the pH of the solution is suitably adjusted and the product is buffered. For intravenous use, the total concentration is controlled to render the preparation substantially isotonic.
As used herein, the term "composition" is intended to encompass a product comprising the specified ingredients in the specific amounts, as well as any product which results, directly or indirectly, from combination of the specific ingredients in the specified amounts.
The compounds of the instant invention may also be co-administered in therapeutic compositions that also contain other well known therapeutic agents that are selected for their particular usefulness against the condition that is being treated. For example, the instant compounds may be useful in combination with known anti- cancer and cytotoxic agents. Similarly, the instant compounds may be useful in combination with agents that are effective in the treatment and prevention of NF- 1 , restinosis, polycystic kidney disease, infections of hepatitis delta and related viruses and fungal infections.
If formulated as a fixed dose, such combination products employ a compound of this invention substantially within the dosage range described below and other pharmaceutically active agent(s) typically within the acceptable dosage range. Compounds of the instant invention may alternatively be used sequentially with known pharmaceutically acceptable agent(s) when a combination formulation is inappropriate.
The daily dosage will normally be determined by the prescribing physician, who may vary the dosage according to the age, weight, and response of the individual patient, as well as the severity of the patient's condition.
In one exemplary application, a suitable amount of compound is administered to a mammal undergoing treatment for cancer. Administration occurs in an amount between about 0.1 mg/kg of body weight to about 60 mg/kg of body weight per day, preferably of between 0.5 mg/kg of body weight to about 40 mg/kg of body weight per day.
The compounds of the instant invention are also useful as a component in an assay to rapidly determine the presence and quantity of famesyl-protein transferase (FPTase) in a composition. Thus the composition to be tested may be divided and the two portions contacted with mixtures which comprise a known substrate of FPTase (for example a tetrapeptide having a cysteine at the amine terminus) and famesyl pyrophosphate and, in one of the mixtures, a compound of the instant invention. After the assay mixtures are incubated for an sufficient period of time, well known in the art, to allow the FPTase to famesylate the substrate, the chemical content of the assay mixtures may be determined by well known immuno- logical, radiochemical or chromatographic techniques. Because the compounds of the instant invention are selective inhibitors of FPTase, absence or quantitative reduction of the amount of substrate in the assay mixture without the compound of the instant invention relative to the presence of the unchanged substrate in the assay containing the instant compound is indicative of the presence of FPTase in the composition to be tested.
It would be readily apparent to one of ordinary skill in the art that such an assay as described above would be useful in identifying tissue samples which contain famesyl-protein transferase and quanti- tating the enzyme. Thus, potent inhibitor compounds of the instant invention may be used in an active site titration assay to determine the quantity of enzyme in the sample. A series of samples composed of aliquots of a tissue extract containing an unknown amount of farnesyl - protein transferase, an excess amount of a known substrate of FPTase (for example a tetrapeptide having a cysteine at the amine terminus) and famesyl pyrophosphate are incubated for an appropriate period of time in the presence of varying concentrations of a compound of the instant invention. The concentration of a sufficiently potent inhibitor (i.e., one that has a Ki substantially smaller than the concentration of enzyme in the assay vessel) required to inhibit the enzymatic activity of the sample by 50% is approximately equal to half of the concentration of the enzyme in that particular sample.
EXAMPLE 1
(± - 1 -(4-C Y ANOBENZY -5-rC 1 -HYDROX Y-3-PHE YLV2- PROPYNYLHMIDAZOLE HYDROCHLORIDE
Step A: Preparation of l -triphenylmethyl-4-
(hydroxymethyl midazole
To a solution of 4-(hydroxymethyl)imidazole hydrochloride (35.0 g, 260 mmol) in 250 mL of dry DMF at room temperature was added triethylamine (90.6 mL, 650 mmol). A white solid precipitated from the solution. Chlorotriphenylmethane (76.1 g, 273 mmol) in 500 mL of DMF was added dropwise. The reaction mixture was stirred for 20 hours, poured over ice, filtered, and washed with ice water. The resulting product was slurried with cold dioxane, filtered, and dried in vacuo to provide the titled product as a white solid which was sufficiently pure for use in the next step.
Step B: Preparation of l -triphenylmethyl-4-
(acetoxymethyl)imidazole Alcohol from Step A (260 mmol, prepared above) was suspended in 500 mL of pyridine. Acetic anhydride (74 mL, 780 mmol) was added dropwise, and the reaction was stirred for 48 hours during which it became homogeneous. The solution was poured into 2 L of EtOAc, washed with water (3 x 1 L), 5% aq. HCI soln. (2 x 1 L), sat. aq. NaHCθ3, and brine, then dried (Na2SO- , filtered, and concentrated in vacuo to provide the crude product. The acetate was isolated as a white powder (85.8 g, 86% yield for two steps) which was sufficiently pure for use in the next reaction.
Step C: Preparation of l-(4-cyanobenzyl)-5-
(acetoxymethyl)imidazole hydrobromide A solution of the product from Step B (85.8 g, 225 mmol) and -bromo- -tolunitrile (50.1 g, 232 mmol) in 500 mL of EtOAc was stirred at 60 °C for 20 hours, during which a pale yellow precipitate formed. The reaction was cooled to room temperature and filtered to provide the solid imidazolium bromide salt. The filtrate was concen¬ trated in vacuo to a volume 200 mL, reheated at 60°C for two hours, cooled to room temperature, and filtered again. The filtrate was concentrated in vacuo to a volume 100 mL, reheated at 60°C for another two hours, cooled to room temperature, and concentrated in vacuo to provide a pale yellow solid. All of the solid material was combined, dissolved in 500 mL of methanol, and warmed to 60°C. After two hours, the solution was reconcentrated in vacuo to provide a white solid which was triturated with hexane to remove soluble materials. Removal of residual solvents in vacuo provided the titled product hydrobromide as a white solid (50.4 g, 67% yield, 89% purity by HPLC) which was used in the next step without further purification.
Step D: Preparation of 1 -(4-cyanobenzy l)-5-
(hydroxymethyDimidazole
To a solution of the acetate from Step C (50.4 g, 150 mmol) in 1.5 L of 3: 1 THF/water at 0 °C was added lithium hydroxide monohydrate ( 18.9 g, 450 mmol). After one hour, the reaction was concentrated in vacuo, diluted with EtOAc (3 L), and washed with water, sat. aq. NaHC0 and brine. The solution was then dried (Na2S04), filtered, and concentrated in vacuo to provide the crude product (26.2 g, 82% yield) as a pale yellow fluffy solid which was sufficiently pure for use in the next step without further purification.
Step E: Preparation of l-(4-cyanobenzyl)-5- imidazolecarboxaldehyde
To a solution of the alcohol from Step D (21.5 g, 101 mmol) in 500 mL of DMSO at room temperature was added triethylamine (56 mL, 402 mmol), then Sθ3-pyridine complex (40.5 g, 254 mmol). After 45 minutes, the reaction was poured into 2.5 L of EtOAc, washed with water (4 x 1 L) and brine, dried (Na2S04), filtered, and concentrated in vacuo to provide the aldehyde (18.7 g, 88% yield) as a white powder which was sufficiently pure for use in the next step without further purification.
Step F: Preparation of (±)-l-(4-cyanobenzyl)-5-[( l-hydroxy-3- phenyl)-2-propynyllimidazole hydrochloride To a solution of phenylacetylene (0.172 mL, 1.56 mmol) in 5 mL of THF at 0 °C was added n-butyllithium (0.530 mL, 2.5 M in hexanes, 1.32 mmol). After 15 minutes, the aldehyde from Step E (254 mg, 1.20 mmol) was added, and the reaction was stirred for 30 minutes. The reaction was quenched with sat. aq. NaHCO , poured into EtOAc, washed with sat. aq. NaHCθ and brine, dried (Na2S04), filtered, and concentrated in vacuo. The resulting product was purified by silica gel chromatography (35-50% acetone/C^C^) to provide 187 mg of the desired alcohol. A portion of this was taken up in CH2CI2 and treated with excess 1 M HCl/ether solution, and concentrated in vacuo. The titled product hydrochloride was isolated as a white solid.
FAB mass spectrum m/e 314 (M+l ). Analysis calculated for C20H15N3O • 1.0 HCI • 0.90 H20: C, 65.63; H, 4.90; N, 1 1.48: Found: C, 65.81 ; H, 4.98; N, 1 1.17.
EXAMPLE 2
(± )- 1 -(4-CY ANOBENZYL)-5-r( 1 -HYDROX Y-4-PHEN YD-3-
BUTYNYL1IMIDAZOLE HYDROCHLORIDE
To a solution of f-butyllithium in 1.5 mL of THF (0.78 mL of 1.7 M in pentane, 1.32 mmol) at -78°C was added tetramethylethyl- enediamine (0.199 mL, 1.32 mmol) and 1 -phenyl- 1-propyne (0.150 mL, 1.20 mmol). The solution was warmed to 0 °C for one hour, then cooled to -78 °C. The aldehyde from Step E of Example 1 (225 mg, 1.07 mmol) on 1.0 mL THF was added, and the reaction allowed to warm to 0 °C. After 30 minutes, the reaction was quenched with sat. aq. NaHCθ3, poured into EtOAc, washed with sat. aq. NaHC03 and brine, dried (Na2S04), filtered, and concentrated in vacuo. The product was purified by silica gel chromatography (3-4% MeOH/C^C ), then taken up in CH2CI2 and treated with excess 1 M HCl/ether solution, and concentrated in vacuo to provide the titled product hydrochloride (48 mg) as a pale yellow foam.
FAB mass spectrum m/e 328 (M+l). Analysis calculated for C21H17N3O • 1.10 HCI • 0.10 Et20: C, 68.56; H, 5.14; N, 1 1.21 ; Found: C, 68.30; H, 5.04; N, 1 1.06.
EXAMPLE 3
(+)-3-(4-CYANOBENZYL)-4-rα -HYDROX Y-3-PHENYD-2- PROPYNYL1PYRIDINE HYDROCHLORIDE
Step A: Preparation of 3-(4-cyanobenzyl)pyridin-4-carboxylic acid methyl ester A solution of 4-cyanobenzyl bromide (625 mg, 3.27 mmol) in dry THF (4mL) was added slowly over ~3 min. to a suspension of activated Zn (dust; 250 mg) in dry THF (2 mL) at 0° under an argon atmosphere. The ice-bath was removed and the slurry was stirred at room temperature for a further 30 min. Then 3-bromopyridin-4- carboxylic acid methyl ester (540 mg. 2.5 mmol) followed by dichlorobis(triphenylphosphine)nickel (II) (50 mg). The resultant reddish-brown mixture was stirred for 3h at ~40-45°C. The mixture was cooled and distributed between EtOAc ( 100 ml) and 5% aqueous citric acid (50 mL). The organic layer was washed with H2θ (2X50 mL), dried with Na2Sθ4. After evaporation of the solvent the residue was purified on silica gel, eluting with 35% EtOAc in hexane to give 420 mg as a clear gum. FAB ms (M+l) 253.
Step B: Preparation of 3-(4-cyanobenzyl)-4-
(hvdroxymethvDpyridine
The title compound was obtained by sodium borohydride (300 mg) reduction of the ester from Step A (415 mg) in methanol (5 mL) at room temperature. After stirring for 4 h the solution was evaporated and the product was purified on silica gel, eluting with 2% methanol in chloroform to give the title compound. FAB ms (M+l ) 225.
Step C: Preparation of 3-(4-cyanobenzyl -4-pyridinal The title compound was obtained by activated manganese dioxide ( 1.0g) oxidation of the alcohol from Step B (240 mg, 1.07 mmol) in dioxane (10 mL) at reflux for 30 min. Filtration and evaporation of the solvent provided title compound, mp 80-83°C.
Step D: Preparation of (±)-3-(4-cyanobenzyl)-4-[( l-hydroxy-3- phenvP-2-propynyllpyridine hydrochloride
The titled compound is prepared from the pyridinal from Step C using the procedured in Step F of Example 1. The product is purified by silica gel chromatography, then taken up in CH2CI2 and treated with excess 1 M HCl/ether solution, and concentrated in vacuo to provide the titled product hydrochloride.
EXAMPLE 4
l -(4-BIPHENYLMETHYL)-5-(4-CYANOBENZYL)IMIDAZOLE
HYDROCHLORIDE SALT
Step A: l -Trityl-4-(4-Cyanobenzyl)-imidazole. To a suspension of activated zinc dust (3.57g, 54.98mmol) in THF (50ml)was added dibromoethane (0.315ml, 3.60mmol) and the reaction stirred under argon at 20°C. The suspension was cooled to 0°C and oc bromo-p-toluinitrile (9.33g, 47.6mmol) in THF (100ml) was added dropwise over a period of 10 min. The reaction was then allowed to stir at 20°C for 6hr and bis(triphenylphosphine)Nickel II chloride (2.4g, 3.64mmol) and 5 -iodotrityl imidazole (15.95g, 36.6mmol) was added in one portion.The resulting mixture was stirred 16hr at 20°C and then quenched by addition of saturated NH4CI solution (100ml) and the mixture stirred for 2 hours. Saturated NaHCθ3 solution was added to give a pH of 8 and the solution was extracted with EtOAc (2x250ml), dried MgS04 and the solvent evaporated in vacuo. The residue was chromatographed (Siθ2, 0-20% EtOAc/CH2Cl2 to afford the title compound as a white solid. i H NMR δ CDCI3 (7.54 (2H, d, J=7.9Hz), 7.38(1H, s), 7.36-7.29 ( 1 1 H, m), 7.15-7.09(6H, m), 6.58(1H, s), and 3.93(2H, s)ppm.
Step B: l -(4-Biphenylmethyl)-5-(4-cyanobenzyl)imidazole hydochloride salt
To l -Trityl-4-(4-Cyanobenzyl)-imidazole (608.8 mg , 1.43 mmol) in acetonitrile (2 ml) was added 4-chloromethyl biphenyl (290mg, 1.43 mmol) and the mixture heated at 55°C for 16 hours. The residue was dissolved in methanol (30 ml) and heated at reflux for 20 mins, cooled and evaporated to dryness. The residue was partitioned between saturated NaHC03 solution and CH2CI2. The organic layer was dried (MgS04) and the solvent evaporated in vacuo. The residue was chromatographed (Si02, 5% methanol in CH2C12) to afford the imidazole which was converted to the HCI salt by treatment with one equivalent of HCI in aqueous acetonitrile. Evaporation of solvent in vacuo afforded the title compound as a white powder. Anal. Calcd for C24H l9N3« 00 HCI:
C, 74.70; H, 5.22; N, 10.89. Found: C, 74.70; H, 5.31 ; N, 10.77.
FAB MS 350 (MH+) * H NMR CD3OD δ 9.03(1H, s), 7.65-7.50(5H, m), 7.44(2H, t, J=7.5Hz), 7.39(1H, s), 7.35( 1H, t, J=7.3Hz), 7.26(2H, d, J=8.1 Hz), 7.20(2H, d, J=8.1Hz), 5.42(2H, s), and 4.17(2H, s) ppm.
EXAMPLE 5
f 1 -(4-CYANOBENZYDIMIDAZOL-5-YLKI 1.1 -BIPHENYL 1-4-
YL ETHANOL
A Grignard reagent, freshly prepared from 4-bromo[ l , l '- biphenyl] (1 16 mg, 500 μmol) and magnesium turnings (18 mg, 730 μmol) in dry THF (500 μl) was added to a dry Argon-purged 3mL flask containing the aldehyde (105 mg, 500 μmol) in dry THF (200 μL) with vigorous stirring at room temperature. After 1 hour the reaction was quenched with sat. NH CI (5 mL) and distributed between EtOAc (50 mL) and H2O (50 mL). The organic phase was evaporated and the residue was chromatographed on silica gel (CHCl3-MeOH (20: 1 )) to yield title (1 17 mg). FAB ms (M+l ) 366.25.
Anal. Calc. for C2.1Hj9N3O-O. lO CHCI3O.IO CH3OH; C, 76.37 : H, 5.16 : N, 1 1.04.
Found: C, 76.13; H, 5:10; N, 10.76.
EXAMPLE 6 [ 1 -(4-CY AN0BENZYL)IMIDAZ0L-5-YL1(T 1.1 '-BIPHENYL1-4-
YDKETONE
The alcohol (Example 5) ( 105 mg, 228 μmol) was added to dioxane (3 mL) and activated Mnθ2 (300 mg) and the black mixture was stirred at reflux for 2 hr. The mixture was filtered and the clear filtrate was evaporated and the residue was chromatographed on silica gel (CHCb-MeOH (30: 1 )) to yield title (35 mg). FAB ms (M+l ) 364.07. Anal. Calc. for C24H17N3θ-0.35 CHC13; C, 72.17; H, 4.32; N, 10.37. Found: C, 71.87; H, 4.45; N, 10.29.
EXAMPLE 7 1 - { T -(4-C Y ANOBENZYD- 1 H-IMID AZOL-5- YL IETH YL ) -4-
PHENYL IMIDAZOLE BIS HYDROCHLORIDE SALT
Step A: lH-Imidazole-4- acetic acid methyl ester hydrochloride A solution of lH-imidazole-4-acetic acid hydrochloride
(4.00g, 24.6 mmol) in methanol (100 ml) was saturated with gaseous hydrogen chloride. The resulting solution was allowed to stand at room temperature for 18 hrs. The solvent was evaporated in vacuo to afford the title compound as a white solid. l H NMR CDC13, δ 8.85( 1H, s), 7.45(1H, s), 3.89(2H, s) and 3.75(3H, s) ppm. Step B: l-(Triphenylmethyl)-lH-imidazol-4-ylacetic acid methyl ester
To a solution of the product from Step A (24.85g, 0.141mol) in DMF (1 15ml) was added triethylamine (57.2 ml, 0.412mol) and triphenylmethyl bromide (55.3g, 0.171mol) and the suspension was stirred for 24 hrs. After this time, the reaction mixture was diluted with EtOAc and water. The organic phase was washed with saturated aqueous NaHCθ3, dried (Na2S04) and the solvent evaporated in vacuo. The residue was purified by chromatography (Siθ2, gradient elution, 0-100% EtOAc in hexanes; ) to provide the title compound as a white solid.
JH NMR CDC13, δ 7.35(1H, s), 7.31(9H, m), 7.22(6H, m), 6.76(1 H, s), 3.68(3H, s) and 3.60(2H, s) ppm.
Step C: [l-(4-Cyanobenzyl)-lH-imidazol-5-yl]acetic acid methyl ester.
To a solution of the product from Step B (8.00g, 20.9mmol) in acetonitrile (70 ml) was added 4-cyanobenzyl bromide (4.10g, 20.92 mmol) and heated at 55°C for 3 hr. After this time, the reaction was cooled to room temperature and the resulting imidazolium salt was collected by filtration. The filtrate was heated at 55°C for 18hrs. The reaction mixture was cooled to room temperature and evaporated in vacuo. To the residue was added EtOAc (70 ml) and the resulting precipitate collected by filtration. The precipitated imidazolium salts were combined, suspended in methanol ( 100 ml) and heated to reflux for 30 min. After this time, the solvent was removed in vacuo,. The resulting residue was suspended in EtOAc (75ml) and the solid isolated by filtration and washed with EtOAc. The solid was treated with saturated aqueous NaHCθ3 solution (300ml) and CH2CI2 (300ml) and stirred at room temperature for 2 hrs. The organic layer was separated, dried (MgSθ4) and evaporated in vacuo to afford the title compound as a white solid l HNMR CDCl3, δ 7.65(1H, d, J=8Hz), 7.53(1H, s), 7.150 H, d, J=8Hz), 7.04(1 H, s), 5.24(2H, s), 3.62(3H, s) and 3.45(2H, s) ppm. Step D: 5-1" 1 -(4-cvanobenzvD- 1 H-imidazolynethanol.
To a stirred solution of the ester from example step C, ( 1.50g, 5.88mmol), in methanol (20 ml) at 0°C, was added sodium borohydride (l .OOg, 26.3mmol) portionwise over 5 min. The reaction was stirred at 0°C for 1 hr and then at room temperature for an additional 1 hr. The reaction was quenched by the addition of saturated NH4CI solution and the methanol evaporated in vacuo.. The residue was partitioned between EtOAc and saturated NaHCθ3 solution and the organic extracts dried, (MgSθ4) and evaporated in vacuo. The residue was purified by chromatography (Siθ2, gradient elution, 4 to 10% methanol in methylene chloride) to afford the title compound as a white solid. 1 H NMR CDCl3 δ 7.64(2H, d, J=8.2Hz), 7.57( 1 H, s), 7.1 1 (2H, d, J=8.2Hz), 6.97(1H, s), 5.23(2H, s), 3.79(2H, t, J=6.2Hz), 2.66(2H, t, J=6.2Hz) ppm.
Step E: 5-(- 1 -(4-Cyanobenzyl)-imidazolylkthylmethanesulfonate. A solution of 5-[l -(4-cyanobenzyl)- l H-imidazolyl]ethanol (0.500 g, 2.20 mmol) in methylene chloride (6 ml) at 0°C was treated with Hunig's base (0.460ml, 2.64mmol) and methanesulfonyl chloride (0.204ml, 2.64mmol). After 2 hrs, the reaction was quenched by addition of saturated NaHC03 solution (50ml) and the mixture extracted with methylene chloride (50ml), dried (MgSθ4) and the solvent evaporated in vacuo. The title compound was used without furthur purification.
1 H NMR CDCl δ 7.69 (lH, S) 7.66(2H, d, J=8.2Hz), 7.15 (2H, d, J=8.2Hz), 7.04( 1 H, s), 5.24(2H, s), 4.31 (2H, t, J=6.7Hz), 2.96(3H, s), and 2.88(2H, t, J=6.6Hz)ppm.
Step F: 1 - { [ 1 -(4-Cyanobenzyl)- 1 H-imidazol-5-yl]ethyl } -4-phenyl imidazole bis hydrochloride salt.
To a suspension of sodium hydride ( 14.2mg, 60% dispersion in mineral oil, 0.356mmol) in DMF (0.30 ml) at 0°C was added 4-phenyl imidazole (48.8mg, 0.339mmol), and stirred for 20 mins. A solution of the mesylate from step E ( lOOmg, 0.339mmol) in DMF (0.50ml) was added to the solution and stirring continued at 0°C for 1 hr and then at room temperature for 16 hrs. The reaction was quenched with saturated ammonium chloride solution (0.10ml), and the the solvent evaporated in vacuo. The residue was purified by chromatography (Siθ2, gradient elution, 2-5% ammonium hydoxide: acetonitrile. The resulting material was converted to the HCI salt by treating an EtOAc solution of the imidazole with gasseous HCI and evaporating the solvent in vacuo.
Anal. Calcd for C22Hl9N5«2.00HCl«1.50H2θ:
C, 58.29; H, 5.34; N, 15.45. Found: C, 58.24; H, 5.47; N, 15.48.
FAB HRMS exact mass calcd for C22H20N5 354.171871 (MH+); found 354.171948. l H NMR CD3OD δ 8.93 (1H, s), 8.75(1H, s), 7.86(1H, s), 7.76(2H, d, J=7.9Hz), 7.69(2H, d, 7.1Hz), 7.65-7.35(6H, m), 5.61 (2H, s) and 4.53(2H,m)ppm.
In vitro inhibition of ras famesyl transferase
Assays of famesyl-protein transferase. Partially purified bovine FPTase and Ras peptides (Ras-CVLS, Ras-CVIM and Ras-CAIL) were prepared as described by Schaber et al.. J. Biol. Chem. 265: 14701 -14704 (1990), Pompliano, et a]., Biochemistry 31 :3800 (1992) and Gibbs et a]., PNAS U.S.A. 86:6630-6634 (1989), respectively. Bovine FPTase was assayed in a volume of 100 μl containing 100 mM -(2-hydroxy ethyl) piperazine- N'-(2-ethane sulfonic acid) (HEPES), pH 7.4, 5 mM MgCl2, 5 mM dithiothreitol (DTT), 100 mM HJ-farnesyl diphosphate ([3H]-FPP; 740 CBq/mmol, New England Nuclear), 650 nM Ras-CVLS and 10 μg/ml FPTase at 31 °C for 60 min. Reactions were initiated with FPTase and stopped with 1 ml of 1.0 M HCL in ethanol. Precipitates were collected onto filter-mats using a TomTec Mach II cell harvester, washed with 100% ethanol, dried and counted in an LKB β-plate counter. The assay was linear with respect to both substrates, FPTase levels and time; less than 10% of the [3H]-FPP was utilized during the reaction period. Purified compounds were dissolved in 100% dimethyl sulfoxide (DMSO) and were diluted 20-fold into the assay. Percentage inhibition is measured by the amount of incorporation of radioactivity in the presence of the test compound when compared to the amount of incorporation in the absence of the test compound.
Human FPTase was prepared as described by Omer et aL, Biochemistry 32:5167-5176 (1993). Human FPTase activity was assayed as described above with the exception that 0.1 % (w/v) polyethylene glycol 20,000, 10 μM ZnCl2 and 100 nM Ras-CVIM were added to the reaction mixture. Reactions were performed for 30 min., stopped with 100 μl of 30% (v/v) trichloroacetic acid (TCA) in ethanol and processed as described above for the bovine enzyme. The compounds of the instant invention described in the above Examples 1 -7 were tested for inhibitory activity against human FPTase by the assay described above and were found to have IC50 of 50 μM.
In vivo ras famesylation assay
The cell line used in this assay is a v-ras line derived from either Ratl or NIH3T3 cells, which expressed viral Ha-ras p21. The assay is performed essentially as described in DeClue, J.E. et ah, Cancer Research 51 :712-717, (1991). Cells in 10 cm dishes at 50-75% confluency are treated with the test compound (final concentration of solvent, methanol or dimethyl sulfoxide, is 0.1 %). After 4 hours at 37°C, the cells are labelled in 3 ml methionine-free DMEM supple- meted with 10% regular DMEM, 2% fetal bovine serum and 400 mCi[35s]methionine (1000 Ci/mmol). After an additional 20 hours, the cells are lysed in 1 ml lysis buffer (1 % NP40/20 mM HEPES, pH 7.5/5 mM MgCl2/lmM DTT/10 mg/ml aprotinen/2 mg/ml leupeptin/2 mg/ml antipain/0.5 mM PMSF) and the lysates cleared by centrifugation at 100,000 x g for 45 min. Aliquots of lysates containing equal numbers of acid-precipitable counts are bought to 1 ml with IP buffer (lysis buffer lacking DTT) and immunoprecipitated with the ras-specific monoclonal antibody Y 13-259 (Furth, M.E. et aL, J. Virol. 43:294-304, (1982)). Following a 2 hour antibody incubation at 4°C, 200 ml of a 25% suspension of protein A-Sepharose coated with rabbit anti rat IgG is added for 45 min. The immunoprecipitates are washed four times with IP buffer (20 nM HEPES, pH 7.5/1 mM EDTA/1 % Triton X- 100.0.5% deoxycholate/0.1 %/SDS/0.1 M NaCl) boiled in SDS-PAGE sample buffer and loaded on 13% acrylamide gels. When the dye front reached the bottom, the gel is fixed, soaked in Enlightening, dried and autoradiographed. The intensities of the bands corresponding to famesylated and nonfamesylated ras proteins are compared to determine the percent inhibition of famesyl transfer to protein.
In vivo growth inhibition assay To determine the biological consequences of FPTase inhibition, the effect of the compounds of the instant invention on the anchorage-independent growth of Ratl cells transformed with either a v-ras, v-raf, or v-mos oncogene is tested. Cells transformed by v-Raf and v-Mos maybe included in the analysis to evaluate the specificity of instant compounds for Ras-induced cell transformation.
Rat 1 cells transformed with either v-ras, v-raf, or v-mos are seeded at a density of 1 x 104 cells per plate (35 mm in diameter) in a 0.3% top agarose layer in medium A (Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum) over a bottom agarose layer (0.6%). Both layers contain 0.1 % methanol or an appropriate concentration of the instant compound (dissolved in methanol at 1000 times the final concentration used in the assay). The cells are fed twice weekly with 0.5 ml of medium A containing 0.1 % methanol or the concentration of the instant compound. Photomicrographs are taken 16 days after the cultures are seeded and comparisons are made.

Claims

WHAT IS CLAIMED IS:
1 . A compound represented by formula I:
or a pharmaceutically acceptable salt thereof, wherein:
R 1 a, R1 b and R2 are independently selected from the group consisting of: hydrogen, aryl, substituted aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, R8O-, R9S(O)m- wherein m is 0, 1 or 2, R8C(O)NR8-, CN, NO2, (R8)2NC(NR8)-, R8C(O)-,
R8OC(O)-, N3, -N(R8)2, R9OC(O)NR8- and C1 -C6 alkyl, unsubstituted or substituted by 1-3 groups selected from the group consisting of:
halo, aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, R8O-, R9S(O)m-, R8C(O)NR8-, CN, (R8)2NC(NR8)-,
R8C(O)-, R8OC(O)-, N3, -N(R8)2 and R9OC(O)NR8-;
R3 and R4 are independently selected from the group consisting of: H, F, Cl, Br, -NR8 2, CF3, NO2, R8O-, R9S(O)m-, R8C(O)NH-, H2NC(NH)-, R8C(O)-, R8OC(O)-, N3, CN,
R9OC(O)NR8-, C1 -C20 alkyl, substituted or unsubstituted aryl and substituted or unsubstituted heterocyclyl;
A3 is selected from: -C≡C— , - R8C = CR8— , aryl, heteroaryl, -C(O)- or a bond;
provided that when A3 is heteroaryl, attachment of A3 the remainder of the molecule is through substitutable heteroaryl ring carbons;
X represents aryl or heteroaryl; provided that when X is heteroaryl, attachment of X the remainder of the molecule is through substitutable heteroaryl ring carbons;
R6 is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -6 perfluoroalkyl, F, Cl, Br, R8O-, R9S(O)m-, R8C(O)NR8, CN, NO2, (R8)2NC(NR8)-, R8C(O)-, R8OC(O)-, N3, -N(R8)2,
R9OC(O)NR8- and C1-C6 alkyl unsubstituted or substituted by 1 -3 groups selected from: aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R8O-, R9S(O)m-, R8C(O)NR8-, CN, (R8)2NC(NR8)-, R8C(O)-, R8OC(O)-, N3, -N(R8)2 and R9OC(O)NR8-;
R7 is independently selected from the group consisting of: hydrogen, aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -6 perfluoroalkyl, F, Cl, Br, R9O-, R9S(O)m-, R8C(O)NR8, CN, NO2, (R8)2NC(NR8)-, R8C(O)-, R8OC(O)-, N3, -N(R8)2,
R9OC(O)NR8- and C1-C6 alkyl unsubstituted or substituted by 1-3 groups selected from: aryl, heterocyclyl, C3-C1 0 cycloalkyl, C2-C6 alkenyl, C2-C6 alkynyl, perfluoroalkyl, F, Cl, Br, R8O-, R9S(O)m-, R8C(O)NR8-, CN, (R8)2NC(NR8)-, R8C(O)-, R8OC(O)-, N3, -N(R8)2 and R9OC(O)NR8-; each R8 is independently selected from hydrogen, C1-C6 alkyl, aryl and aralkyl; each R9 is independently selected from C1-C6 alkyl and aryl; A1 and A2 are independently selected from the group consisting of: a bond, -CH=CH-, -C≡C-, -C(O)-, -C(O)NR8-,
-NR8C(O)-, -O-, -N(R8)-, -S(O)2N(R8)-, -N(R8)S(O)2-, and S(O)m; V is selected from the group consisting of: hydrogen, heterocyclyl, aryl, C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl,
provided that V is not hydrogen if A 1 is S(O)m and V is not hydrogen if A 1 is a bond, n is 0 and A2 is S(O)m ;
provided that when V is heterocycle, attachment of V to R8 and to A 1 is through a substitutable ring carbon; W represents heterocyclyl; each n and p independently represents 0, 1 , 2, 3 or 4;
r is 0 to 5, provided that r is 0 when V is hydrogen, and t is 1.
2. A compound in accordance with claim 1 wherein R1 a , R1 b and R2 are independently selected from: hydrogen, -N(R8)2, R8C(O)NR8- or unsubstituted or substituted C1-C6 alkyl wherein the substituent on the substituted C1-C6 alkyl is selected from unsubstituted or substituted aryl, -N(R8)2, R8O- and R8C(O)NR8-.
3. A compound in accordance with claim 1 wherein R3 and R4 are selected from: hydrogen, C1-C6 alkyl, Cl, Br, F, R8O- and CF3.
4. A compound in accordance with claim 1 wherein A3 represents -C≡C— , -CR8=CR8-, -C(O)- or a bond..
5. A compound in accordance with claim 1 wherein A3 represents -C(O)-.
6. A compound in accordance with claim 1 wherein A3 represents aryl or heteroaryl.
7. A compound in accordance with claim 1 wherein R6 represents CN.
8. A compound in accordance with claim 1 wherein R7represents hydrogen, unsubstituted or substituted C1 -C6 alkyl.
9. A compound in accordance with claim 1 wherein R8 represents H or C1 -6 alkyl, and R9 is C1 -6 alkyl.
10. A compound in accordance with claim 1 wherein A1 and A2 are independently selected from: a bond, -C(O)NR8-,
-NR8C(O)-, -O-, -N(R8)-, -S(O)2N(R8)- and-N(R8)S(O)2-.
1 1. A compound in accordance with claim 1 wherein V is selected from hydrogen, heterocyclyl and aryl.
12. A compound in accordance with claim 1 1 wherein V is phenyl.
13. A compound in accordance with claim 1 wherein W is heterocyclyl selected from imidazolinyl, imidazolyl, oxazolyl, pyrazolyl, pyyrohdinyl, thiazolyl and pyridyl.
14. A compound in accordance with claim 1 wherein W is selected from imidazolyl and pyridyl.
15. A compound in accordance with claim 1 wherein X represents aryl.
16. A compound in accordance with claim 15 wherein X represents phenyl.
17. A compound in accordance with claim 1 wherein X represents heteroaryl.
18. A compound in accordance with claim 17 wherein X represents pyridyl.
19. A compound in accordance with claim 1 wherein m is 0 or 2.
20. A compound in accordance with claim 1 wherein n and p are 0, 1 , 2 or 3.
21. A compound in accordance with claim 1 wherein t is 1.
22. A compound in accordance with claim 1 represented by formula la:
wherein:
R3, R4, A3, R8, R9, X, m, n, p and r are as originally defined; each R1 a and R2 is independently selected from hydrogen and C1-C6 alkyl;
each Rib is independently selected from: hydrogen, aryl, heterocyclyl, C3- 10 cycloalkyl, C2-6 alkenyl, R8O-, -N(R8)2 and C 1 -C6 alkyl unsubstituted or substituted by aryl, heterocyclyl, cycloalkyl, alkenyl,
R8O- and -N(R8)2; R6 is independently selected from: hydrogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1-C6 perfluoroalkyl, F, Cl, R8O-, R8C(O)NR8-, CN, NO2, (R8)2N-C(NR8)-, R8C(O)-, R8OC(O)-, -N(R8)2, or R9OC(O)NR8-, and C1-C6 alkyl substituted by C1-C6 perfluoroalkyl, R8O-, R8C(O)NR8-, (R8)2N-C(NR8)-, R8C(O)-, R8OC(O)-, -N(R8)2 and R9OC(O)NR8-;
R7 represents H or C1 -6 alkyl; A 1 and A2 are independently selected from: a bond,
-CH=CH-, -C≡C-, -C(O)-, -C(O)NR8-, O, -N(R8)- and S(O)m; and V is selected from: hydrogen; aryl; heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if A1 is S(O)m and V is not hydrogen if A1 is a bond and A2 is S(O)m ;
provided that when V is heterocycle, attachment of V to R8 and to A 1 is through a substitutable ring carbon.
23. A compound in accordance with claim 1 represented by formula lb:
wherein:
R 1 a, R 1 b, R2, A 1 , A2, R3, R4, R6, R8, R9, X, m, n, p and r are as originally defined;
R7 is selected from: hydrogen and C1-C6 alkyl; V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl and thienyl; aryl; C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if A1 is S(O)m and V is not hydrogen if A1 is a bond, n is 0 and A2 is S(O)m;
provided that when V is heterocycle, attachment of V to R8 and to A1 is through a substitutable ring carbon;
and
W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
24. A compound in accordance with claim 1 represented by formula Ic:
wherein:
R1 a, R1 b, R2, A1 , A2, R3, R4, R6, R8, R9, X, m, n, p and r are as originally defined;
R7 is selected from: hydrogen and C1-C6 alkyl;
V is selected from: hydrogen, heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl, isoquinolinyl, and thienyl, aryl, C1 -C20 alkyl wherein from 0 to 4 carbon atoms are replaced with a heteroatom selected from O, S, and N, and C2-C20 alkenyl, provided that V is not hydrogen if A1 is S(O)m and V is not hydrogen if A 1 is a bond, n is 0 and A2 is S(O)m ;
provided that when V is heterocycle, attachment of V to R8 and to A 1 is through a substitutable ring carbon;
and
W represents heterocyclyl selected from pyrrolidinyl, imidazolyl, pyridinyl, thiazolyl, indolyl, quinolinyl and isoquinolinyl.
25. A compound in accordance with claim 1 represented by formula Id:
wherein: each R2 is independently selected from hydrogen and C1-C6 alkyl; R3, R4, A3, R8, R9, X, m and p are as originally defined; and R6 is selected from the group consisting of: hydrogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1 -C6
perfluoroalkyl, F, Cl, R8O-, R8C(O)NR8-, CN, NO2, (R8)2N-C(NR8), R8C(O)-, R8OC(O)-, -N(R8)2, or R9OC(O)NR8- and C1-C6 alkyl substituted by C1-C6 perfluoroalkyl, R8O-, R8C(O)NR8-,
(R8)2N-C(NR8)-, R8C(O)-, R8OC(O)-, -N(R8)2 or R9OC(O)NR8-.
26. A compound in accordance with claim 1 represented by formula Ie: c
/
wherein:
X and A3 are as originally defined;
each R2 is independently selected from: hydrogen and C1-C6 alkyl; R3 and R4 are independently selected from H, F, Cl, Br,
N(R8)2, CF3, NO2, (R8)O-, (R9)S(O)m-, (R8)C(O)NH-, H2N-C(NH)-, (R8)C(O)-, (R8)OC(O)-, N3, CN, (R9)OC(O)NR8-, C1 -C20 alkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heterocyclyl; and R8, R9, m and p are as originally defined.
27. A compound in accordance with claim 1 represented by the formula:
28. A pharmaceutical composition comprising a compound in accordance with claim 1 in combination with a
pharmaceutically acceptable carrier.
29. A method of inhibiting famesyl-protein transferase in a mammalian patient in need of such treatment which comprises administering to said patient an effective amount of a compound in accordance with claim 1.
30. A method of treating cancer in a mammalian patient in need of such treatment which comprises administering to said patient an anti -cancer effective amount of a compound in accordance with claim 1.
31. A method for treating neurofibromin benign proliferative disorder in a mammalian patient in need of such treatment which comprises administering to said patient an effective amount of a compound in accordance with claim 1 to treat neurofibromin benign proliferative disorder.
32. A method for treating blindness related to retinal vascularization in a mammalian patient in need of such treatment which comprises administering to said patient an effective amount of a compound in accordance with claim 1 to treat blindness related to retinal vascularization.
33. A method for treating infections from hepatitis delta and related viruses in a mammalian patient in need of such treatment which comprises administering to said patient an anti-viral effective amount of a compound in accordance with claim 1.
34. A method for preventing restenosis in a mammalian patient in need of such treatment which comprises administering to said patient a compound in accordance with claim 1 in an amount effective for preventing restenosis.
35. A method for treating polycystic kidney disease in a mammalian patient in need of such treatment which comprises administering to said patient a compound in accordance with claim 1 in an amount effective to treat polycystic kidney disease.
36. A method for treating or preventing a disease selected from cancer, neurofibromin benign proUferative disorder, blindness related to retinal vascularization, infections from hepatitis delta and related viruses, restenosis and polycystic kidney disease in a mammalian patient in need of such treatment, which comprises administering to an effective amount of a compound in accordance with claim 1 to treat or prevent said disease.
37. A pharmaceutical composition made by combining the compound of Claim 1 and a pharmaceutically acceptable carrier.
38. A process for making a pharmaceutical composition comprising combining a compound of Claim 1 and a pharmaceutically acceptable carrier.
EP97918643A 1996-04-03 1997-04-01 Inhibitors of farnesyl-protein transferase Withdrawn EP0891334A1 (en)

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