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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 123 35

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 115 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 103 26

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 77 31

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 54 6

Repositories

Showing 10 of 75 repositories
  • pywarper Public

    Conformal mapping-based warping of neuronal arbor morphologies.

    berenslab/pywarper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 10, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 24 4 Updated Apr 10, 2025
  • pygridfit Public

    Python port of gridfit (John D'Errico, 2006)

    berenslab/pygridfit’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 9, 2025
  • hh_sbi Public
    berenslab/hh_sbi’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Apr 9, 2025
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox’s past year of commit activity
    Jupyter Notebook 9 MIT 1 0 0 Updated Apr 4, 2025
  • t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    berenslab/t-simcne’s past year of commit activity
    Python 116 12 1 1 Updated Mar 23, 2025
  • iclr-dataset Public

    ICLR dataset

    berenslab/iclr-dataset’s past year of commit activity
    Jupyter Notebook 24 5 1 0 Updated Mar 21, 2025
  • ephyspy Public

    A Python package for electrophysiological feature extraction for patch-clamp experiments.

    berenslab/ephyspy’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 7 0 Updated Mar 19, 2025
  • AIMS2025-NeuroSimInf Public

    Course repository for Simulation and Inference for Neuroscience

    berenslab/AIMS2025-NeuroSimInf’s past year of commit activity
    Jupyter Notebook 0 5 1 0 Updated Mar 19, 2025
  • Learning-Disease-State Public Forked from GustavKS/Learning-Disease-State

    Learning Disease State from Noisy Ordinal Disease Progression Labels

    berenslab/Learning-Disease-State’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 0 Updated Mar 14, 2025
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