A Nextflow pipeline for Antimicrobial Resistatnce exploration in metagenomic samples

Genomic Object Detection: An Improved Approach for TE Detection and Classification using CNN

expressions on VCFs

Deep learning prediction of Alu exonization events

Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"

Instantly find and follow the same users from your X(Twitter) follower on Bluesky.

A bioinformatics pipeline for the identification and analysis of novel repeats.

KUDOs to Gary Wong for developing freeamp (0.9.3)

Somatic Retrotransposon Insertion Toolkit

Genomic VCF to tab-separated values

Genotyping Mobile Element Insertions based on remapping reads

Earl Grey: A fully automated TE curation and annotation pipeline

Trinity RNA-Seq de novo transcriptome assembly

identify proviral deletions resulting from LTR recombination events

Neural network classification of TE

Few scripts facilitating the extraction of info from Repeat Masker .out files

🌽 Population Genetic Simulation Framework of Transposable Elements