Stars
BarinthusBio / HLAfreq
Forked from DAWells/scrapeAFAggregate HLA allele frequencies data from allelefrequencies.net at large multi population scale
Learning the language of protein-protein interactions
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from cancer-specific splicing events (neojunctions). The code avai…
Automated Hypothesis Testing with Agentic Sequential Falsifications
Inferential Methods for Multimodal and Other Networks
Constructing the genernalized suffix array of a string set
Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, Mistral Small 3.1 and other large language models.
DeepSeek LLM: Let there be answers
DeepSeek-V2: A Strong, Economical, and Efficient Mixture-of-Experts Language Model
DeepSeek-VL2: Mixture-of-Experts Vision-Language Models for Advanced Multimodal Understanding
Integrate the DeepSeek API into popular softwares
Janus-Series: Unified Multimodal Understanding and Generation Models
DeepSeek-Coder-V2: Breaking the Barrier of Closed-Source Models in Code Intelligence
DeepSeek Coder: Let the Code Write Itself
Scripts for the controlled SARS-CoV-2 human challenge study
A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
Github repo for AIRR Data Commons registry specification
antigenomics / tcremp
Forked from yuliajk/tcrempT-cell receptor sequence embedding via prototypes
Hackathon event in St Petersburg, our team takes first place.
