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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 406

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 130

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 300 166

Repositories

Showing 10 of 94 repositories
  • forecasts-viz Public
    nextstrain/forecasts-viz’s past year of commit activity
    JavaScript 1 0 3 2 Updated Apr 8, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 48 28 26 4 Updated Apr 8, 2025
  • docs.nextstrain.org Public

    Umbrella documentation project for Nextstrain

    nextstrain/docs.nextstrain.org’s past year of commit activity
    Python 18 13 22 8 Updated Apr 8, 2025
  • mumps Public

    Nextstrain build for mumps virus

    nextstrain/mumps’s past year of commit activity
    Python 2 5 4 2 Updated Apr 7, 2025
  • veme-2022 Public

    Workshop for VEME 2022: Real-time tracking of pathogen evolution using Nextstrain

    nextstrain/veme-2022’s past year of commit activity
    4 MIT 2 0 1 Updated Apr 7, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 33 27 9 15 Updated Apr 7, 2025
  • status Public

    Nextstrain status pages

    nextstrain/status’s past year of commit activity
    Go 1 MIT 0 2 0 Updated Apr 7, 2025
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli’s past year of commit activity
    Python 27 MIT 20 65 4 Updated Apr 7, 2025
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 8 0 Updated Apr 7, 2025
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika’s past year of commit activity
    Python 8 10 4 3 Updated Apr 4, 2025
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