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SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

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  1. seqan3 seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 424 82

  2. seqan seqan Public

    SeqAn's official repository.

    C++ 488 171

Repositories

Showing 10 of 48 repositories
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    seqan/seqan3’s past year of commit activity
    C++ 424 82 30 1 Updated Apr 7, 2025
  • sharg-parser Public

    The modern argument parser for c++ tools

    seqan/sharg-parser’s past year of commit activity
    C++ 11 7 15 4 Updated Apr 7, 2025
  • actions Public
    seqan/actions’s past year of commit activity
    Shell 0 CC-BY-4.0 2 0 0 Updated Apr 7, 2025
  • sahara Public

    Approximate Pattern Matching with Search Schemes

    seqan/sahara’s past year of commit activity
    C++ 0 1 1 1 Updated Apr 7, 2025
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    seqan/raptor’s past year of commit activity
    C++ 52 18 8 4 Updated Apr 7, 2025
  • ibf-fpga Public

    Mirror of https://git.zib.de/hpc-research/Projects/seqanatfpga/min-ibf-fpga-oneapi

    seqan/ibf-fpga’s past year of commit activity
    C++ 1 0 0 0 Updated Apr 5, 2025
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    seqan/chopper’s past year of commit activity
    C++ 9 BSD-3-Clause 9 6 2 Updated Apr 5, 2025
  • app-template Public template

    This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.

    seqan/app-template’s past year of commit activity
    CMake 6 9 19 0 Updated Apr 5, 2025
  • needle Public

    A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

    seqan/needle’s past year of commit activity
    C++ 14 6 7 2 Updated Apr 5, 2025
  • seqan Public

    SeqAn's official repository.

    seqan/seqan’s past year of commit activity
    C++ 488 171 104 5 Updated Apr 2, 2025
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